Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 1062 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 906 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 793 / 0 Protein kinase superfamily protein (.1) AT1G68690 326 / 5e-101 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G38560 324 / 7e-101 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24550 323 / 1e-100 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G23540 319 / 2e-98 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 319 / 2e-98 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G26150 320 / 3e-98 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT3G24540 312 / 4e-98 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001996 [exp] 745 / 0 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 514 / 2e-174 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 433 / 8e-141 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 394 / 4e-126 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 395 / 6e-126 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 344 / 1e-109 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 325 / 2e-101 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 321 / 3e-99 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013014 [exp] 310 / 3e-98 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 1161 / 0 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 1150 / 0 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 828 / 0 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 578 / 0 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 578 / 0 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 353 / 1e-112 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 348 / 1e-109 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 344 / 2e-108 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 318 / 8e-99 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 315 / 3e-98 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10006148 pacid=23148577 polypeptide=Lus10006148 locus=Lus10006148.g ID=Lus10006148.BGIv1.0 annot-version=v1.0 ATGGCCGAGAAGGTAGTGGTTGCAGTGAAGGCCTCTAAGGAGATTCCTAAGACTGCTTTGGTTTGGGCTTTGACTCATGTTGTCCAGCCAGGGGACTGCA TTACCCTGCTTGTTGTTGTACCTTCCCAGATTTCAGGTCGCAAGTTTTGGGGTTTCCCAAGATTTGCTGGGGATTGTGCTAGTGGTCATAAAAAGTCTCA ACTGGGAGCAACCTCGGAGCAGAAGAGTGACATTACAGATTCATGCTCGCAAATGATACTTCAGCTCCACGATGTTTACGATCCTAACAAAATCAATGTG AAGATAAAGATTGTATCTGGTTCCCCTTGTGGAGCAGTAGCTGTGGAGGCTAAGAAAGCTCAAGCAAATTGGGTTGTGCTAGACAAACATCTAAAACATG AGGAGAAGCGATGCATGGAAGAACTACAGTGTAACATAGTGATCATGAAGCGATCTCAACCAAAAGTTCTACGCTTGAATTTGATAGGATCAGCCAAGGA CGCTGAAGTCATTGGTCCTTCATCTTCAAAAGTGGATGAAGCTTCTGAGAATCAGTCCAAGAAAGATAACGGGTCTACTACAGATTCAATTCCTGGCCCA GTTGTGACTCCGACTAGTAGTCCGGAGTTAGGGACTCCGTTTACAGCTACAGAAGCTGGAACGTCTTCAGTGTCAAGTGATCCAGGAACTTCACCATTTT TCATCACAGGATCTAATGGTGGCATGAAGAAGGAGGAATCTTTGGCTGTTAAGGATACGAGAGAACTTGACGACTCTGGTTCCGAGACAGATTGTGATCA GTTATCTACGACATCTGCAAGTATGAGGTTTGAGCCTTGGATAGGAGAGTTTATTACTTCTCAGGCCCATGCCTCACGACGCATGGAAAAGCGGTCTCTA CTAAATGCTGGTAGATCACAAGCATCAAGGAACCAGACCTCGTTTAATAAGACCTCCAATGTTAACAGACAAACTGGTTTTGGGATGTCCAACTACCGGG CTGATTCAGATTTAGGTGGAGATGTCAGAGAAGCCATATCATTACAAAGAAATGCACCTTCTGGTCCGCCTCCTTTGTGTTCAATATGTCAGCACAAAGC ACCTGTCTTTGGAAAGCCCCCAAGGTGGTTCAGTTATGCCGAGTTAGACCTTGCTACTGGTGGGTTTTCCCAAGCTAATTTCTTGGCAGAAGGTGGGTTT GGATCTGTTCACAGAGGTGTGCTGCCAGATGGCCAGGCAGTTGCTGTTAAGCAGCACAAATTGGCTAGCACGCAAGGGGATCATGAGTTTTGCTCGGAAG TGGAGGTGCTTAGCTGTGCTCAGCATCGCAATGTTGTTATGCTGATTGGATTTTGTATTGAAGATAAAAGAAGATTATTGGTCTATGAGTATATATGCAA CGGTTCCTTGGATTCTTACCTATACGGGAATCAGCGAGAGCCATTGGAATGGCCTGCTCGCCAGAAGATTGCTGTAGGTGCTGCTCGGGGGTTGCGTTAT CTGCATGAAGAGTGCAGAGTAGGTTGTATCGTCCACCGTGATATGCGGCCCAACAATATTCTAATAACACATGATTTCGAACCATTGGTTGGAGATTTTG GCCTGGCTAGGTGGCAGCCTGATGGCGACACTGGCGTCGAAACAAGAGTTATTGGAACATTTGGGTATTTGGCACCGGAATATGCCCAGAGTGGTCAAAT AACAGAAAAAGCGGACGTATATTCTTTTGGTGTGGTGTTGGTTGAGCTAGTGACAGGCCGCAAGGCGGTAGATCTTAACCGCCCCAAGGGCCAGCAATGT CTCACTGAATGGGCACGTCCATTGTTGGAAGAATACGCTGTTGATGAACTGATAGACCCGCGCCTGGGAAATCGATTCTCTGAGCAAGAAGTGTACTGCA TGCTTCAAGCTGCATCATTATGCATACGCCGGGATCCTCAATCTAGGCCTCGCATGTCACAGGTTCTGCGCGTACTGGAAGGCGACATGCTGATGGATAT GAACTACATGTCAACACCTGGTTCTGACATTGGAAATCGGAGTGGACGGATGCTGCAAGAACAGAGGCAGCAACAACAACAACAGCATTACAGCGGACCA TTAGGAAGTGAGGCATTTGAAGGGTTCAGCGCCAATAAGGTATCTGTTGAAACACAAATGGCAACCTTCTAA
AA sequence Show only first row Show all	>Lus10006148 pacid=23148577 polypeptide=Lus10006148 locus=Lus10006148.g ID=Lus10006148.BGIv1.0 annot-version=v1.0 MAEKVVVAVKASKEIPKTALVWALTHVVQPGDCITLLVVVPSQISGRKFWGFPRFAGDCASGHKKSQLGATSEQKSDITDSCSQMILQLHDVYDPNKINV KIKIVSGSPCGAVAVEAKKAQANWVVLDKHLKHEEKRCMEELQCNIVIMKRSQPKVLRLNLIGSAKDAEVIGPSSSKVDEASENQSKKDNGSTTDSIPGP VVTPTSSPELGTPFTATEAGTSSVSSDPGTSPFFITGSNGGMKKEESLAVKDTRELDDSGSETDCDQLSTTSASMRFEPWIGEFITSQAHASRRMEKRSL LNAGRSQASRNQTSFNKTSNVNRQTGFGMSNYRADSDLGGDVREAISLQRNAPSGPPPLCSICQHKAPVFGKPPRWFSYAELDLATGGFSQANFLAEGGF GSVHRGVLPDGQAVAVKQHKLASTQGDHEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSYLYGNQREPLEWPARQKIAVGAARGLRY LHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQC LTEWARPLLEEYAVDELIDPRLGNRFSEQEVYCMLQAASLCIRRDPQSRPRMSQVLRVLEGDMLMDMNYMSTPGSDIGNRSGRMLQEQRQQQQQQHYSGP LGSEAFEGFSANKVSVETQMATF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	0	1
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	5.3	0.7449
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	5.4	0.7988
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	6.2	0.7857
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	7.3	0.7659
AT4G38120			ARM repeat superfamily protein...		Lus10033267 [exp]	19.1	0.7240
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	19.2	0.7270
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	19.2	0.7645
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	22.6	0.6847
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	27.5	0.7144
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	29.4	0.6957

Compare expression of checked genes

Lus10006148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.