Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17950 92 / 3e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027309 [exp] 199 / 4e-64 AT3G17950 121 / 7e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045700 [exp] 128 / 4e-36 AT3G17950 120 / 3e-34 unknown protein Potri.015G036900 [exp] 124 / 1e-34 AT3G17950 118 / 2e-33 unknown protein Potri.009G030100 [exp] 40 / 0.0009 AT5G02440 98 / 1e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006150 pacid=23148580 polypeptide=Lus10006150 locus=Lus10006150.g ID=Lus10006150.BGIv1.0 annot-version=v1.0 ATGTCTTGTATCCGACGGAGAAGAATCTGTCGCCGACGAGCTTTCGGTTGCCGGAAGGAGGGAAATCGGGAGTGGGAGAGCAAGATCCTTTCCACGGTCG TGGAAGTTAGGGTGGTCAGGGGAGATTCCAATGTTGATGACAACAATGATGAGGTCGAATCTGAAAACGGACTCCTCGAGAAGGCCGGCGGGTCGCTGGA GATGAGGCCGAGGAACTCAGGAGGAGGAAGAAGGAAGAGATTGTATTTAAATTTTTTTGTTCAGTTTCCGCTCTCTGGAAAAGCAGAGAGAAACCGTATC AATTCAATTATGGTTCCACTTCCGACACCGTCTCCCACCAGCTCTTCCGTTTCCTCCTCCGATCTCGACACCGAGTCAACAGGCTCTTTCTTCCACGATC GGAGCACCACATTAGGTACTCTGATGGGCGTAACATTCCCAGCCGCCGCTGTCTCCGTAGACCAATCTGCACCAGCCGCCTTGGATCTCAATTTCAATAA TTCAAGAAACCAGAGGAGGGTTATGCGAATCAAGAAGAAATTCCACCAGACAACGGCGTTTGCTGAGAGGCGGAGGAAGTGGTGGAGTCTCTGCAGGGAC GCTGAGGCCAGTCCGGCTTCTCTTGGGGAGTTTCTGGAGGTGGAAAGGAGGTACGGCGACGCGGCCTTCTTTGACGGCGATGAAGATGCAGCTGCTGCAG AGACTGAAGGAGGAACCGGGGGACGCCCTCTGTTTGCGGACGGAAGGGTTCTGCCACCGGCTGAAGTGGTCGTTGGCGGTGGATCCTCATCTGCTGCGGG GAGAGGAGCTATGAGTAGATTTCCGGTTTCGCTGACTGGGATCTGTAGTGGTGGTGTGGGATAA
AA sequence Show only first row Show all	>Lus10006150 pacid=23148580 polypeptide=Lus10006150 locus=Lus10006150.g ID=Lus10006150.BGIv1.0 annot-version=v1.0 MSCIRRRRICRRRAFGCRKEGNREWESKILSTVVEVRVVRGDSNVDDNNDEVESENGLLEKAGGSLEMRPRNSGGGRRKRLYLNFFVQFPLSGKAERNRI NSIMVPLPTPSPTSSSVSSSDLDTESTGSFFHDRSTTLGTLMGVTFPAAAVSVDQSAPAALDLNFNNSRNQRRVMRIKKKFHQTTAFAERRRKWWSLCRD AEASPASLGEFLEVERRYGDAAFFDGDEDAAAAETEGGTGGRPLFADGRVLPPAEVVVGGGSSSAAGRGAMSRFPVSLTGICSGGVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17950			unknown protein		Lus10006150 [exp]	0	1
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	2.8	0.8267
AT2G41200			unknown protein		Lus10008568 [exp]	3.2	0.8693
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	3.7	0.8360
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	8.1	0.8363
AT2G41200			unknown protein		Lus10032687 [exp]	8.5	0.8532
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	9.5	0.8260
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	12.6	0.8478
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	15.1	0.8589
AT3G06240			F-box family protein (.1)		Lus10013872 [exp]	15.5	0.8200
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	16.2	0.7974

Compare expression of checked genes

Lus10006150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.