Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13750 121 / 3e-32 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 109 / 4e-28 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 108 / 6e-28 BGAL4 beta-galactosidase 4 (.1) AT3G52840 99 / 1e-24 BGAL2 beta-galactosidase 2 (.1) AT1G45130 89 / 4e-21 BGAL5 beta-galactosidase 5 (.1) AT4G36360 88 / 1e-20 BGAL3 beta-galactosidase 3 (.1.2) AT5G20710 73 / 2e-15 BGAL7 beta-galactosidase 7 (.1) AT2G28470 70 / 2e-14 BGAL8 beta-galactosidase 8 (.1.2) AT5G63810 69 / 4e-14 BGAL10 beta-galactosidase 10 (.1) AT2G32810 68 / 1e-13 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000701 [exp] 132 / 3e-36 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 108 / 5e-28 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 106 / 4e-27 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10040557 [exp] 105 / 1e-26 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2) Lus10006009 [exp] 100 / 4e-25 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 100 / 1e-24 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 100 / 1e-24 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10025980 [exp] 85 / 2e-19 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10014278 [exp] 84 / 2e-19 AT2G32810 597 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038500 [exp] 115 / 2e-30 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 114 / 6e-30 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 102 / 1e-25 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 89 / 7e-21 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 87 / 3e-20 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 82 / 1e-18 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.011G044300 [exp] 79 / 2e-17 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.009G012400 [exp] 78 / 3e-17 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.001G025701 [exp] 77 / 9e-17 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.017G057900 [exp] 76 / 2e-16 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006151 pacid=23148579 polypeptide=Lus10006151 locus=Lus10006151.g ID=Lus10006151.BGIv1.0 annot-version=v1.0 ATGGCGAACACCTCACCGCAGGCTGACAGAAACCTAAAATCTGGCGAGCCTCCCAGAAACGTGGAGATGCATTTCGAGGTCGCTACTACTTCCTCCTTTA TCGTGGACGTCAACCAACTTTCTCTGACGCTGCTAGTGTGGTCCACGCACCACCCACTAGATCTCTCTCCTCTCCGGAAAACTCCTCTTTTACTCCGCCA TAGCTCCCCTTCTTCCTATTCCTCCATCACAGTCGCTTCCAACTCAGACCCCATGTTCCGCTTTTTAATCAAATGCGACATCCATTTGATGTCTGCTCCT GCTGGGAACTCTCCATTGGCTTTATACATGGGAAGCATGGGCAAAGGTCAAGTATGGATAAACGGACAGAGTGTTGGACGCTACTGGCCTGCATACAAGG CAGTTGGGAGCTGTGATGAATGCAGTTATGCTGGTACATATAGTGAGAAGAAATGCTTGAGAAATTATGGAGAAGCATCACAGAGATGGTAA
AA sequence Show only first row Show all	>Lus10006151 pacid=23148579 polypeptide=Lus10006151 locus=Lus10006151.g ID=Lus10006151.BGIv1.0 annot-version=v1.0 MANTSPQADRNLKSGEPPRNVEMHFEVATTSSFIVDVNQLSLTLLVWSTHHPLDLSPLRKTPLLLRHSSPSSYSSITVASNSDPMFRFLIKCDIHLMSAP AGNSPLALYMGSMGKGQVWINGQSVGRYWPAYKAVGSCDECSYAGTYSEKKCLRNYGEASQRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10006151 [exp]	0	1

Compare expression of checked genes

Lus10006151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.