Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13730 360 / 3e-121 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 285 / 2e-91 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G05690 168 / 3e-48 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT5G38970 159 / 2e-44 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 159 / 5e-44 Cytochrome P450 superfamily protein (.1) AT3G50660 155 / 2e-42 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G30180 149 / 1e-40 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT1G12740 143 / 3e-38 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT2G29090 135 / 1e-35 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G45340 134 / 3e-35 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028345 [exp] 278 / 5e-89 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 275 / 7e-88 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041737 [exp] 171 / 6e-50 AT3G50660 481 / 9e-170 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10014850 [exp] 166 / 2e-46 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10040193 [exp] 159 / 3e-44 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10034377 [exp] 151 / 1e-41 AT5G38970 648 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10005075 [exp] 150 / 3e-41 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10003650 [exp] 147 / 6e-40 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10024016 [exp] 147 / 7e-40 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200100 [exp] 423 / 5e-146 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 416 / 3e-143 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 280 / 4e-90 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 174 / 8e-50 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 173 / 3e-49 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 168 / 1e-47 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.004G117700 [exp] 165 / 2e-46 AT5G38970 655 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Potri.017G154600 [exp] 164 / 4e-46 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.008G067500 [exp] 164 / 5e-46 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.010G156800 [exp] 155 / 8e-43 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10006152 pacid=23148575 polypeptide=Lus10006152 locus=Lus10006152.g ID=Lus10006152.BGIv1.0 annot-version=v1.0 ATGCTGATGGTGTTAGGGAAAATATCAACCATCGGAATACCGGCAGCATCAACGACTTCCTGCTGCTGCTTACTGTTTGTGTCGCTATTATTGATACTCC CGTTGCTACTACTGTTAATTAAGAGGGCAACAAGAAGAGGTCATTCATCATCATCTTCTTCTTCTTCTTCTTCAGTTCTTCCTTTAGGTAACTTAGGATG GCCGCTCATCGGAGAGACCATCGAGTTCATCACCTCTGCTTACTCCGACCGTCCAGAGACCTTCATGAACAAGCGCTGTACCATGTACGGGAAGGTGTTC AAGTCGCATATATTCGGGAGCCCAGCAATCGTGTCAACAGATGCACAAGTCATCAAATTCATACTTCAAAGTGATGCCAATGCGTTCGTTCCTTCCTATC CAAAATCACTGATGGAGCTGATGGGAAAATCCTCCATACTGGTCATCAACGGAAGCTTGCAGAGAAGAATCCATGGCTTACTTGGAGCTTTCTTCAAGTC TGCATATCTCAAAGCTCAGATCACAGCACACATGGACAAGCTTCTCATCCAATCAATGGCCAAATGGTCAGAAGATGAGCCCATACTCATTCAAGACCAA ACCAAGAATATTGCTTTCCAAGTCCTAGCAAAGGCATTGATTAGTTTGGACCAAGGTGCTGAGATGGAATTCCTCAAGAAACAATTCCAAGAATTCATAT TGGGACTCATGTCTCTTCCTATAAAACTACCTGGAACTCAACTCTACCGATCCTTGCAGGCAAAGAAGGAAATGATCAAGCTAGTGAGGAAGATCATACA ATCAAAAAGAGAGAGGAATGATTCATCCACGCCACCAAAAGATGTAATAGATGTGTTTCTAAGCGACTCAAGTGAAGAATTGAGTGATGAGTTGATAGCC GATAACATAATCGATATGATGATACCGGGTGAAGATTCAGTGCCGGTTCTAATGACTCTAGCCATCCATTACCTCTCTGATTGTCCTGCAGCGCTACAAC AATTAACGGAGAAAGATATGAGCAACAACAACTTCACACCATTTGGGGGTGGACAAAGACTATGCCCTGGAGTTGACTTGGCTCGACTCGAAGCTTCCAT TTTCATACACCATTTGGTGACTCAATTCAGCAGGTTTATAGGTACACAGTATATTAAATAA
AA sequence Show only first row Show all	>Lus10006152 pacid=23148575 polypeptide=Lus10006152 locus=Lus10006152.g ID=Lus10006152.BGIv1.0 annot-version=v1.0 MLMVLGKISTIGIPAASTTSCCCLLFVSLLLILPLLLLLIKRATRRGHSSSSSSSSSSVLPLGNLGWPLIGETIEFITSAYSDRPETFMNKRCTMYGKVF KSHIFGSPAIVSTDAQVIKFILQSDANAFVPSYPKSLMELMGKSSILVINGSLQRRIHGLLGAFFKSAYLKAQITAHMDKLLIQSMAKWSEDEPILIQDQ TKNIAFQVLAKALISLDQGAEMEFLKKQFQEFILGLMSLPIKLPGTQLYRSLQAKKEMIKLVRKIIQSKRERNDSSTPPKDVIDVFLSDSSEELSDELIA DNIIDMMIPGEDSVPVLMTLAIHYLSDCPAALQQLTEKDMSNNNFTPFGGGQRLCPGVDLARLEASIFIHHLVTQFSRFIGTQYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	0	1
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	3.0	0.8979
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	9.5	0.8745
AT1G52140			unknown protein		Lus10005478 [exp]	10.3	0.8846
AT2G28780			unknown protein		Lus10040846 [exp]	18.1	0.8182
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	20.4	0.8022
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	23.5	0.8272
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	25.1	0.8700
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	29.3	0.8389
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	29.8	0.8815
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	29.9	0.8381

Compare expression of checked genes

Lus10006152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.