Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17665 125 / 7e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003829 [exp] 407 / 2e-141 AT1G17665 280 / 2e-92 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038600 [exp] 142 / 6e-39 AT1G17665 294 / 2e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006153 pacid=23148581 polypeptide=Lus10006153 locus=Lus10006153.g ID=Lus10006153.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTCGCCGTAGCTTTCGCTTCTTCATATCTCTCCAATCTTATCACCAATACAACCGCCGTTCCGATATCTTACTATTTCTTCTCCTTCCCGA CCCACAAAACCCAACCGCAACCCATGCTGCTCTCTCATCTCCTCCCTTTCTTCTTCTTTTTCTTCGCCTTCACCCTCTCCTTCACATTCTCTCTTTTTTT CCTCTGCAGAAGTCTCCGGAGGCAGAGGCGAGATGAGCAAATCGACCCGGCTGTCAAATCCGAGTCTTTGTCCAAATTGATTGATGGGGTTCGTGAAATT GAGACCACCACCCACTTGCCCCATTCCCTCCTCCTCGAAATATTTCCCTCCGATCCCCCCAAATGGGCTTCCATGTTCGCCGGTGATCCAGCTGGACCTC AGTCGGCTCCAGGTGATGACCCGGAAGCATCATCCGTCGGCAGAGATTCGCAGAGGTTAAAGAAGAAGAAGAGGAGAGCGAAGAAGAACCGATTGGCTTC GAAAATCGACGACAATGACGGTGGCAGTGAAGAAGAGAAGGGTTTGGTTAGGGAAATGTCAGATGGTTCGGGTTTGTGCCGAATCAAGCCCGAGCTGGTT TGTTTGTACCCATTTACTTCTGCTAGCAGTGCCACTCAGAGGAAAATTAAGCAGCAGTATGATCAGCTTGTGAAGTGCAATGAAAAGAAAGGATTGACAT TGGCTCAGATATACAAGCTAGAAGTAGAACAGAAGAGATTAGAAGAGGATGCATTTGTCTATAACTGGCTTCAGCAACAGCTTAAACTTTCACCGGCTTA CAAAAAGTTCGAGAATGCATGTAGAATGTCGGATTGCGAAGGTGCTCCGAAGTTAGCCTGTGGAAGCAGAAGAATGGGAAGTCGCGGACATGGGCGAGTT AAAAGGCACTCATCGAGGAATCATCACAGTTTTCGTAACTGCCAGTGGCTGCTTGTGAGCATGAGGTGTTTGAAGGGAATTCAGGGATGTGCTACTTCAG ACAGTAGCTCGTACAACATTCCCACGCAAGCTAATGGATCCGTTGGAAAGGCTCTCAACCCCCACAGCTCTCCGGAAGATAGAATCGATGCGATGGCCAT AGATCTATTAGGGGGCTCCTATTTGACGCCCTAA
AA sequence Show only first row Show all	>Lus10006153 pacid=23148581 polypeptide=Lus10006153 locus=Lus10006153.g ID=Lus10006153.BGIv1.0 annot-version=v1.0 MAALAVAFASSYLSNLITNTTAVPISYYFFSFPTHKTQPQPMLLSHLLPFFFFFFAFTLSFTFSLFFLCRSLRRQRRDEQIDPAVKSESLSKLIDGVREI ETTTHLPHSLLLEIFPSDPPKWASMFAGDPAGPQSAPGDDPEASSVGRDSQRLKKKKRRAKKNRLASKIDDNDGGSEEEKGLVREMSDGSGLCRIKPELV CLYPFTSASSATQRKIKQQYDQLVKCNEKKGLTLAQIYKLEVEQKRLEEDAFVYNWLQQQLKLSPAYKKFENACRMSDCEGAPKLACGSRRMGSRGHGRV KRHSSRNHHSFRNCQWLLVSMRCLKGIQGCATSDSSSYNIPTQANGSVGKALNPHSSPEDRIDAMAIDLLGGSYLTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17665			unknown protein		Lus10006153 [exp]	0	1
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10017892 [exp]	1.4	0.8029
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	3.5	0.8009
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	5.5	0.7474
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	6.0	0.7327
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	10.2	0.6993
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	11.2	0.7160
AT1G28100			unknown protein		Lus10001800 [exp]	11.2	0.7286
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	14.0	0.7020
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	15.0	0.7182
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	21.2	0.7256

Compare expression of checked genes

Lus10006153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.