Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31580 128 / 6e-34 tRNAHis guanylyltransferase (.1) AT2G32320 123 / 3e-32 tRNAHis guanylyltransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041070 [exp] 226 / 3e-70 AT2G31580 587 / 0.0 tRNAHis guanylyltransferase (.1) Lus10022302 [exp] 191 / 3e-59 AT1G17860 176 / 4e-54 Kunitz family trypsin and protease inhibitor protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G233300 [exp] 135 / 1e-36 AT2G32320 737 / 0.0 tRNAHis guanylyltransferase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04446 [flax] [poplar] Thg1 tRNAHis guanylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006155 pacid=23148556 polypeptide=Lus10006155 locus=Lus10006155.g ID=Lus10006155.BGIv1.0 annot-version=v1.0 ATGTCAACGAGTACCATGGGTTCAAAGAAACAAGAGCAAAATGAGATACTTCATCAGCAGTTCAATATCAATTACAATAATCTTCTGAAGATATTCCGCT GGGGTTCTTGCATCCTAATCATGGAGGTGGAAACTATTGTAAAACACAATAAAAATGGATCTCCTATACCAAGACTCAGAAAACAGATATCAACAGTACA TTCCCAGGATATTTCTAGAAGAAACTTTTGGAATGATAAGCCACATCTCATCAAAGAATTGGGTGCTTTTGTGGCAGATATCACAAGAATTGACAGAGAC TACGTCAAGTATTTCCAATCTGAAAATAAGCTGATGCCATATACATGGGCTGTTCGACATTGTTTCTTCTGTTGTATCATTATTTACCTCTATGTACGTG ATGAAATGGAAGACATTCTTTCCATTGATAGATCTGCATTTGATGGAAGGGTCGTCTGCTATCCATCATTAGAAATCTTGCGAAATTACCTATCGTGGAG GCAAGTTGATTGCCATATAAACAACCAGTATAATACTTGTTTCTGGGGTACTCAAACACAAGATAAAATGGAACTGCTGGCAACTAAATTTGGTACGGAC TACAATGGTTTAAGGAAAATGTTACGCCTTGGTTCCTCTGTTTTTCGGAAAGAGGAGAATGGATGTAGCAGGATAGTTGTAGAGCACTGTAATATAATTG ATGATGGCTTCTGGAAGGCTCACGCATACATCTTAGGCTTATAG
AA sequence Show only first row Show all	>Lus10006155 pacid=23148556 polypeptide=Lus10006155 locus=Lus10006155.g ID=Lus10006155.BGIv1.0 annot-version=v1.0 MSTSTMGSKKQEQNEILHQQFNINYNNLLKIFRWGSCILIMEVETIVKHNKNGSPIPRLRKQISTVHSQDISRRNFWNDKPHLIKELGAFVADITRIDRD YVKYFQSENKLMPYTWAVRHCFFCCIIIYLYVRDEMEDILSIDRSAFDGRVVCYPSLEILRNYLSWRQVDCHINNQYNTCFWGTQTQDKMELLATKFGTD YNGLRKMLRLGSSVFRKEENGCSRIVVEHCNIIDDGFWKAHAYILGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	0	1
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	1.4	0.9611
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	2.8	0.9491
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	3.7	0.9380
					Lus10008697 [exp]	4.0	0.9451
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	4.2	0.9431
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	5.5	0.9490
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	7.0	0.9421
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	7.2	0.9383
AT1G54820			Protein kinase superfamily pro...		Lus10004461 [exp]	7.7	0.9194
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	11.7	0.9407

Compare expression of checked genes

Lus10006155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.