Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27000 759 / 0 ATARP2, WRM, ARP2 WURM, actin related protein 2 (.1) AT2G42100 357 / 2e-121 Actin-like ATPase superfamily protein (.1) AT3G53750 353 / 2e-120 ACT3 actin 3 (.1) AT2G37620 353 / 2e-120 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G12110 353 / 5e-120 ACT11 actin-11 (.1) AT5G09810 352 / 6e-120 ACT2/7, ACT7 actin 7 (.1) AT3G18780 349 / 2e-118 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 348 / 2e-118 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G46520 344 / 1e-116 ACT12 actin-12 (.1) AT5G59370 343 / 4e-116 ACT4 actin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041069 [exp] 694 / 0 AT3G27000 654 / 0.0 WURM, actin related protein 2 (.1) Lus10005819 [exp] 351 / 2e-119 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 351 / 2e-119 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 351 / 2e-119 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 351 / 3e-119 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 351 / 3e-119 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 351 / 3e-119 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 350 / 6e-119 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 350 / 6e-119 AT3G12110 766 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326600 [exp] 770 / 0 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1) Potri.010G204300 [exp] 352 / 8e-120 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 352 / 8e-120 AT3G12110 765 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 352 / 1e-119 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 352 / 1e-119 AT3G12110 767 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 351 / 3e-119 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 351 / 3e-119 AT5G09810 775 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 350 / 7e-119 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 342 / 6e-116 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 330 / 5e-111 AT5G09810 554 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10006156 pacid=23148541 polypeptide=Lus10006156 locus=Lus10006156.g ID=Lus10006156.BGIv1.0 annot-version=v1.0 ATGGATAGCAAAAAGGTCGTCGTCTGCGACAATGGAACTGGGTATGTAAAGTGTGGATTTGCTGGAGAGAATTTCCCCACTTCTGTATTCCCATGTGTGG TTGGGAGGCCCATGCTTCGATATGAGGAATCACTTATGGAACAACAATTAAAGGATATTGTTGTCGGAGAGTCCTGCGCAGAATTGAGACATCAACTAGA CATTTCTTATCCTGTGAACAACGGAATCATCCAAAATTGGGATGACATGGGACATGTTTGGGATCATGCATTCTACAGTGAACTTAAAATAGACCCAGCC GAATGCAAGATTCTGCTCACTGACCCACCTCTTAATCCCAAAAAGAATCGTGAATTGATGATTGAGACCATGTTTGAGAAGTATAATTTTGCTGGCGTGT TCATTCAAATCCAAGCAGTGTTAACATTGTACGCCCAAGGTTTGTTGACTGGACTAGTCATCGACTCTGGTGATGGTGTAACTCATGTGGTTCCTGTTGT CGATGGTTACTCGTTTCCTCATCTTACAAAGCGGATGAATGTTGCTGGTCGGCACATAACATCGTATCTGATTGACCTTCTCTCGCGGAGAGGGTATTCA ATGAGCAGGAATGCTGATTTTGAGACTGTTAGGGAAATTAAAGAGAAGCTTTGCTATATAAGTTATGATTACAAGAGAGAATACCAACTCGGGCTTGAGA CTACCATTCTTGTTAAGCATTATACTCTGCCAGATGGAAGAACCATTAAAGTAGGCACAGAACGATTTCAAGCACCGGAGGCTCTTTTCACACCTGAACT TATAGATGTTGAAGGTGACGGAATGGCTGATATGGTATTCCGCTGCATCCAGGAAATGGATATTGACAACAGAATGATGCTATACCAGCATATTGTGTTG AGTGGTGGAAGCACCATGTACCCCGGTCTGCCTAGCCGCTTGGAGAAGGAAATACAGGATCGGTACCTTGATGCTGTTCTGAAGGGAAACAAAGATGGAT TGAAGAAATTGCGACTAAGGATTGAGGATCCACCACGAAGAAAGCATATGGTGTACTTAGGAGGTGCAGTTCTTGCTGGAATTATGAAGGATGCACCTGA GTTCTGGATCAGCAGGGAAGATTATCTAGAAGAAGGCATCGATTGCCTAAACAAGTGTGGTCAAGCTTGA
AA sequence Show only first row Show all	>Lus10006156 pacid=23148541 polypeptide=Lus10006156 locus=Lus10006156.g ID=Lus10006156.BGIv1.0 annot-version=v1.0 MDSKKVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEQQLKDIVVGESCAELRHQLDISYPVNNGIIQNWDDMGHVWDHAFYSELKIDPA ECKILLTDPPLNPKKNRELMIETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLIDLLSRRGYS MSRNADFETVREIKEKLCYISYDYKREYQLGLETTILVKHYTLPDGRTIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVL SGGSTMYPGLPSRLEKEIQDRYLDAVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISREDYLEEGIDCLNKCGQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10006156 [exp]	0	1
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	1.4	0.9578
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10036578 [exp]	2.0	0.9346
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	6.9	0.8849
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Lus10005861 [exp]	8.9	0.9265
					Lus10040842 [exp]	11.4	0.9283
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	11.5	0.9052
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	11.8	0.8919
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	12.4	0.9044
AT2G40120			Protein kinase superfamily pro...		Lus10040203 [exp]	13.6	0.8895
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	14.1	0.9135

Compare expression of checked genes

Lus10006156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.