Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 179 / 2e-54 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 160 / 4e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 150 / 1e-43 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 140 / 9e-40 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 139 / 2e-39 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 135 / 9e-38 Leucine-rich repeat (LRR) family protein (.1) AT1G35710 131 / 1e-35 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 126 / 8e-34 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G12610 112 / 8e-30 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G20820 112 / 1e-29 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041064 [exp] 330 / 5e-114 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 227 / 5e-73 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 223 / 2e-71 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10005017 [exp] 118 / 7e-31 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 115 / 8e-30 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019036 [exp] 114 / 1e-29 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10015700 [exp] 110 / 1e-29 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10042177 [exp] 113 / 3e-29 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 113 / 4e-29 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098900 [exp] 202 / 3e-63 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 199 / 6e-62 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G099100 [exp] 119 / 2e-31 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G269800 [exp] 112 / 7e-30 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G188700 [exp] 114 / 2e-29 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G235100 [exp] 113 / 3e-29 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G029700 [exp] 112 / 5e-29 AT4G08850 587 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.009G064300 [exp] 110 / 6e-29 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.011G164800 [exp] 111 / 1e-28 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G017500 [exp] 109 / 1e-28 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10006159 pacid=23148568 polypeptide=Lus10006159 locus=Lus10006159.g ID=Lus10006159.BGIv1.0 annot-version=v1.0 ATGAGAAATAACCAACTCTCCGGTCGAATACCCACCAATATCGACAAGTTAGGAGCACAACTCTACGCGCTAGACCTCCAAGGAAACCGGTTCACTGGCT CAATCCCTGCATCCATATCCGAATTAATCGGTTTGAGCCAGTTGAACCTCGCCAACAACTTCATCACTGGAAAAATCCCAAACGGAATCCGCAACCTGAA AAACCTGACATTAATAGACCTCCAGAATAATCAGCTCTCCAGATTCATTCCTGAAATTTTCTCATCCTTCACTCAGCTATGGAGTCTCAATCTTTCGAGC AACCAATTTTCCAGGGGAATCCTTGCTTCTATTTCTTCAATTTCCCGAACGTTAATGTACCTTGACCTAAGCCACAATTTGGTAACCGGTCAAATCCCTA GTTACCTGGGGAAATTTGAAGCGCTCGACACTCTGAACCTTGCTTGGAACAATCTTACTGGGCCGATTCCCACGAGTTTCAAGAATCTGACCAAGATCTT CAATCTAGACCTTTCTCACAATTCCCTCGTCAATCCATTCCCAATCTGA
AA sequence Show only first row Show all	>Lus10006159 pacid=23148568 polypeptide=Lus10006159 locus=Lus10006159.g ID=Lus10006159.BGIv1.0 annot-version=v1.0 MRNNQLSGRIPTNIDKLGAQLYALDLQGNRFTGSIPASISELIGLSQLNLANNFITGKIPNGIRNLKNLTLIDLQNNQLSRFIPEIFSSFTQLWSLNLSS NQFSRGILASISSISRTLMYLDLSHNLVTGQIPSYLGKFEALDTLNLAWNNLTGPIPTSFKNLTKIFNLDLSHNSLVNPFPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006159 [exp]	0	1
AT1G59970			Matrixin family protein (.1)		Lus10037418 [exp]	8.8	0.6589
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	12.8	0.6943
AT3G56800		ACAM-3, CAM3	calmodulin 3 (.1)		Lus10042597 [exp]	15.6	0.6885
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Lus10024255 [exp]	18.0	0.6449
AT3G61660			unknown protein		Lus10005152 [exp]	33.9	0.6297
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10006750 [exp]	40.9	0.6422
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026138 [exp]	46.5	0.6299
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10025840 [exp]	56.4	0.6085
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	71.7	0.5985
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10039171 [exp]	104.2	0.5244

Compare expression of checked genes

Lus10006159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.