Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 142 / 3e-41 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 131 / 2e-37 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 124 / 8e-35 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 122 / 6e-34 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 117 / 4e-32 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 115 / 3e-31 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 57 / 2e-10 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 55 / 9e-10 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 54 / 2e-09 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G12145 52 / 6e-09 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041064 [exp] 189 / 5e-60 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 166 / 3e-50 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 150 / 2e-44 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10004827 [exp] 57 / 3e-10 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031824 [exp] 56 / 5e-10 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037955 [exp] 56 / 6e-10 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10002551 [exp] 55 / 1e-09 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 54 / 2e-09 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10030847 [exp] 54 / 2e-09 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098900 [exp] 127 / 1e-35 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 123 / 2e-34 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 74 / 3e-16 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G117700 [exp] 62 / 3e-12 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G030800 [exp] 53 / 5e-09 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031700 [exp] 52 / 1e-08 AT5G20480 368 / 3e-113 EF-TU receptor (.1) Potri.007G009200 [exp] 51 / 2e-08 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.010G040200 [exp] 51 / 2e-08 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G031300 [exp] 51 / 2e-08 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G064300 [exp] 50 / 3e-08 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10006160 pacid=23148574 polypeptide=Lus10006160 locus=Lus10006160.g ID=Lus10006160.BGIv1.0 annot-version=v1.0 ATGAACTCCCTCTTTCTCTTCCTCTCCTTGCCAACTCTCCAATGCCTCCAAGCTACATCACGTGTCTGTCACGTGGATGACGAATCAGGTCACTTAGCAT TCAAATCGGGGATCACCCACGACCTGTCGGGTATGCTCTCCTCGTGGAAACCTGGTACCGATTGTTGCACTTGGGTAGGGATAACTTGTCTTTACAACGA CCGAGTCACCGCCCTCTCGTTCTATGGCCAACTTGACAACTTCCTCTCCAGTACCATCTCACCGTCCCTCGCTAAGCTCAGGAACCTCGACGGTATATAC CTCAGAAATATGAGAAACATTTCAGGTAACTTCCCAGTCTTTTTGTACGGAATGTCCAAATTTTAA
AA sequence Show only first row Show all	>Lus10006160 pacid=23148574 polypeptide=Lus10006160 locus=Lus10006160.g ID=Lus10006160.BGIv1.0 annot-version=v1.0 MNSLFLFLSLPTLQCLQATSRVCHVDDESGHLAFKSGITHDLSGMLSSWKPGTDCCTWVGITCLYNDRVTALSFYGQLDNFLSSTISPSLAKLRNLDGIY LRNMRNISGNFPVFLYGMSKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006160 [exp]	0	1
					Lus10017698 [exp]	2.0	0.8893
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	2.8	0.8791
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	3.5	0.8659
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10019633 [exp]	4.8	0.7412
AT3G05550			Hypoxia-responsive family prot...		Lus10015191 [exp]	8.6	0.6873
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	8.7	0.8494
					Lus10022511 [exp]	9.7	0.8494
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	9.8	0.8491
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	10.7	0.8494
					Lus10010827 [exp]	11.5	0.8494

Compare expression of checked genes

Lus10006160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.