Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1647 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1624 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1612 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G09870 1610 / 0 CESA5 cellulose synthase 5 (.1) AT4G32410 1277 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G17420 1252 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 1249 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 1234 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G18780 1104 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT3G03050 748 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041063 [exp] 1913 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1845 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1840 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10028597 [exp] 1284 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1274 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10007538 [exp] 1247 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1245 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1245 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007296 [exp] 1100 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076500 [exp] 1734 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 1647 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.005G194200 [exp] 1628 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.013G019800 [exp] 1439 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1406 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G029400 [exp] 1300 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1296 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 1286 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1283 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 1263 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10006161 pacid=23148548 polypeptide=Lus10006161 locus=Lus10006161.g ID=Lus10006161.BGIv1.0 annot-version=v1.0 ATGAACACTGGGGGTCGGCTGATTGCTGGTTCTCACAACCGGAATGAGTTCGTCCTCATTAATGCTGATGAAAGTGGCAGAATTCGATCAGTGAGAGAAT TGAGCGGGCAGGTCTGCCAGATATGCGGAGATGAGATAGAGATTACTGCAGATGGGGAGCTTTTTGTTGCTTGCAACGAATGTGCTTTCCCAGTTTGCAG GCCTTGTTATGAATATGAGAGAAGAGAGGGGACTCAGGCTTGCCCTCAGTGCCGAACAAGATTCAAACGTCTTAAAGGCAGTGCTCGGGTTGAAGGTGAT GAAGAAGAAGATGACATTGATGATTTGGAACATGAGTTTGATTATGGTAATCTGGAAGGTTTAACCCCAGAACAAGTTACAGAGTTAATGCTTGCTGCAC GGCTTAACACTGGACGTGGATCGCAAGTCAATGGCTTTGGCACTCCTATGTCAGATCTTGATTCTTCTCCTCCTGGTGCTAAAGTTCCTCTCTTAACCTA CGGCGAGGAGGATGCTGATATTTCCTCCGATCAACATGCTCTTATTGTTCCTCCGCATTCTGGTCATGCCAATAGAGTTCACCCAATGCCTTACACTGAT CCATCAGTACCTTTGCAACCGAGACCCATGGTTCCTCAGAAAGATATAGCAGTCTATGGTTATGGGAGTGTAGCATGGAAGGACAGAATGGAAGAATGGA AGAGAAGGCAAAGTGATAAACTTCAGGTTGTCAAACATGAAGGGGAAAATGATGGTGCAAGTTTTGATGGGAATGAACTAGATGACCCTGATTTGCCAAT GATGGATGAAGGTAGGCAGCCACTTTCAAGGAAGTTACCACTACCTTCTAGCAAGATAAGTCCATATAGGTTGATCATCGTTCTCCGTCTTGTGGTGCTG GGCTTGTTTTTCCACTATCGTATTCTCCACCCAGTCAAGGATGCATATCCCTTGTGGCTGACATCAGTTATTTGTGAGATATGGTTTGCTGTATCATGGA TTCTTGACCAGTTTCCAAAATGGTGCCCTATAGAACGAGAGACATATCTCGATCGACTTTCTTTGAGGTATGAAAAAGAAGGGAAACCATCAGAGTTAGC TAGCGTGGACATCTTTGTCAGTACAGTGGACCCCATGAAAGAACCTCCATTGATCACAGCGAACACTGTTCTCTCTATTCTTGCTGTTGACTATCCTGTT GACAAGGTTGCATGCTATGTTTCTGACGATGGCGCTGCTATGCTTACGTTTGAAGCACTCTCTGAGACAGCTGAATTTGCAAGGAAATGGGTCCCGTTTT GCAAAAAGTTCAATATTGAGCCTCGAGCTCCCGAGTGGTACTTCTGTCAGAAGATGGACTACTTGAAGAATAAAGTCCACCCTTCATTTGTTAGGGAAAG GCGTGCAATGAAGAGAGACTATGAAGAATTCAAGGTTAGGATCAATGGGTTGGTTTCCACCGCTCAAAAGGTTCCGGAAGATGGCTGGACAATGCAAGAT GGAACCCCATGGCCTGGAAACAGTGTTCGAGACCATCCTGGCATGATACAGGTATTCCTTGGCCATAGTGGTGTTCGTGATGTTGAAGGGAATGAGTTAC CGCGGTTAGTTTATGTCTCCCGTGAGAAAAGGCCTGGATTTGATCATCATAAAAAGGCCGGGGCTATGAATTCATTGATGCGGGTCTCAGCAGTTCTATC AAATGCTCCCTATCTACTGAATGTGGATTGTGATCACTATATTAACAATAGCAAGGCACTGAGGGAAGCTATGTGCTTTATGATGGATCCAACATCAGGG AAAAAAGTTTGCTATGTACAATTCCCACAAAGATTTGATGGCATTGATCGTCATGATAGATACTCCAATAGGAATGTAGTATTCTTTGATATCAACATGA AAGGGTTGGATGGTTTGCAAGGACCAATTTATGTGGGTACCGGGTGTTGTTTCCGAAGACACGCACTTTATGGCTATGATGCTTTTATGGCTATGATCCC CCTGCCACAAAAAAGCCTCCTGGAAAAACCTGCAACTGTTGGCCTAAATGGTGCTGCCTATGTTGCGGGTCCAGGAAAAATAAGAAGTCGAAGGGTAAGG ACAAAAAAAATAAGTCGAAGAACAGGGAAGCATCAAAGCAAATCCATGCTCTTGAAAATATTGAAAAAGGAATACAAGGTATTAGATTTGGTCTCGTCAT ATTTGAAAAGCATGGACTCCATTTCTCTGCTCAGAGAGGCCATCCAAGTTATCAGTTGTGGTTACGAGGACAAAACTGACTGGGGAAAAGAAGTGGGCTG GATTTATGGTTCTGTTACAGAAGATATCTTGACTGGATTCAAGATGCATTGCCACGGATGGAGGTCTGTATATTGTATTCCCAAAAGGCCTGCATTTAAA GGGTCAGCTCCCATCAATCTTTCGGATCGTCTTCATCAAGTTCTTCGATGGGCTCTTGGTTCTGTGGAGATTTTCTTCAGCAAACATTGTCCAATTTGGT ATGGATATGGGGGCGGACTCAAGTGGTTGGAACGATTTTCGTATATTAACTCTGTTGTGTACCCTTGGACTTCGATTCCCCTGTTGGTTTACTGTACCCT GCCAGCTATCTGCCTTCTCACCGGGAAATTCATCGTTCCCGAGATTAGCAACTATGCAAGTCTTGTGTTCATGGCGCTTTTCATATCCATTGCTGCAACT AGTATCCTTGAGATGCAATGGGGCAAAGTTGGATTAGATGACATGTGGAGGAATGAGCAGTTTTGGGTTATTGGAGGTGTTTCATCCCATTTCTTTGCTC TCTTCCAAGGTCTGCTCAAGGTTCTAGCCGGAGTAAGCACAAACTTCACCGTCACTTCAAAAGCAGCCGATGATGGAGAATTCTCAGAGCTTTACATATT TAAGTGGACTTCACTCTTAATCCCTCCCACGACTCTATTGATCATGAATGTGATAGGAGTTGTTGTCGGTATCTGTGATGCCATCAATAATGGGTATGAC TCATGGGGTCCGTTGTTCGGTAGGCTATTCTTTGCCATCTGGGTGATTGTCCACCTCTACCCGTTCCTCAAAGGTCTCCTTGGGAAGCAAGACCGCATGC CTACCATCATTGTGGTGTGGTCTATTCTTCTATCGTCGATTCTAACTCTACTGTGGGTTCGAGTAAACCCATTTGTGAATCGAGATGGACCTGTGTTGGA GGTTTGCGGGTTGAATTGCGATTGA
AA sequence Show only first row Show all	>Lus10006161 pacid=23148548 polypeptide=Lus10006161 locus=Lus10006161.g ID=Lus10006161.BGIv1.0 annot-version=v1.0 MNTGGRLIAGSHNRNEFVLINADESGRIRSVRELSGQVCQICGDEIEITADGELFVACNECAFPVCRPCYEYERREGTQACPQCRTRFKRLKGSARVEGD EEEDDIDDLEHEFDYGNLEGLTPEQVTELMLAARLNTGRGSQVNGFGTPMSDLDSSPPGAKVPLLTYGEEDADISSDQHALIVPPHSGHANRVHPMPYTD PSVPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKRRQSDKLQVVKHEGENDGASFDGNELDDPDLPMMDEGRQPLSRKLPLPSSKISPYRLIIVLRLVVL GLFFHYRILHPVKDAYPLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPV DKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKFNIEPRAPEWYFCQKMDYLKNKVHPSFVRERRAMKRDYEEFKVRINGLVSTAQKVPEDGWTMQD GTPWPGNSVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLMRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSG KKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCCFRRHALYGYDAFMAMIPLPQKSLLEKPATVGLNGAAYVAGPGKIRSRRVR TKKISRRTGKHQSKSMLLKILKKEYKVLDLVSSYLKSMDSISLLREAIQVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFK GSAPINLSDRLHQVLRWALGSVEIFFSKHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCTLPAICLLTGKFIVPEISNYASLVFMALFISIAAT SILEMQWGKVGLDDMWRNEQFWVIGGVSSHFFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIMNVIGVVVGICDAINNGYD SWGPLFGRLFFAIWVIVHLYPFLKGLLGKQDRMPTIIVVWSILLSSILTLLWVRVNPFVNRDGPVLEVCGLNCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	0	1
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	1.0	0.9517
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	6.3	0.8880
AT4G31340			myosin heavy chain-related (.1...		Lus10036424 [exp]	6.6	0.8603
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	7.3	0.8759
AT2G34250			SecY protein transport family ...		Lus10031399 [exp]	7.3	0.8462
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10028154 [exp]	7.4	0.8713
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	9.6	0.8838
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	9.8	0.8745
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	12.4	0.8660
AT5G20300		Toc90	translocon at the outer envelo...		Lus10027712 [exp]	13.2	0.8547

Compare expression of checked genes

Lus10006161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.