Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22850 283 / 1e-93 SNARE associated Golgi protein family (.1) AT1G03260 73 / 1e-14 SNARE associated Golgi protein family (.1) AT5G19070 69 / 4e-13 SNARE associated Golgi protein family (.1) AT2G02370 52 / 3e-07 SNARE associated Golgi protein family (.1.2) AT4G22850 41 / 0.0009 SNARE associated Golgi protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041062 [exp] 320 / 9e-109 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 76 / 3e-15 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 74 / 9e-15 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 70 / 2e-13 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 66 / 4e-12 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 59 / 8e-10 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 49 / 2e-06 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071900 [exp] 291 / 3e-97 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 284 / 8e-94 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 70 / 2e-13 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 70 / 2e-13 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.003G117400 [exp] 48 / 3e-06 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 48 / 5e-06 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.001G078700 [exp] 48 / 6e-06 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10006162 pacid=23148554 polypeptide=Lus10006162 locus=Lus10006162.g ID=Lus10006162.BGIv1.0 annot-version=v1.0 ATGCCCACCCTCGTCATTAACTTGCGACATCTCCCATCTCCGCCGTGCATCGGCCCCAATCATCACCACCACCACCACCACCACCACCTTTCTTCTCCAG CATCTACTTCTTCTTCCTCCTTCCCCTGCCGCTTCAGACCCAACTACACTAACCGCTTCAATTTCTTATCCCCTCGCTCTTCCCTTAAGCAAACCCGGAA AAAGCAGCAGCAGCAAGAAAAGACCGATGATCCTCCTCAGAGCTTGCGGTGGTTCTTGAATTCCAAGGGGGACGACGATGACGACGATGACAACGGCGAG GACGGCGGCAAGGGTGAGAGTGATGACGGCGGCGGGGATACAGGGATTAAAGGGAAGGTGCTTTCTGTGGGTGTTGCTGGGGTTTTGCTAGTCGGTGTTG TTGGTGGGTTTGGCGGCGTTGGGTATGTTTATCGGGATCAGATTAATGACTTCTTGAATCAGTTCTCTGGGTTTATTGAAGGTTACGGGCCAGCTGGATA TGCTATATTTGTGGCAGTATATGCAGGATTGGAAATTCTTGCACTTCCGGCAATCCCATTGACGATGACAGCTGGACTTCTTTTCGGACCTTTGATTGGC ACCATCATAGTCTCAATTAGTGGAACAGTTGCAGCGAGTGTTGCTTTTCTAATTGCTAGGTACTTTGCACGCGAGCGAATCTTAAAACTTGTCGACGGGA ATAAAAAGTTTCTTGCCATAGACAAAGCAATTGGGGAGAATAGCTTCAGGATTGTCACACTCCTCCGATTGAGCCCTTTGCTTCCATTTTCCCTAGGAAA TTATTTATATGGATTGACATCGGTCAAGTTCGTCCCTTATTTCTTCGGAAGCTGGCTCGGCATGCTTCCGGGTTCGTGGGCATATGTGAGTGCTGGTGCA CTTGGGCGTGCTATAATTAAAGAAGAGTCTGAGATTGGATTGCCAGAAGGAAATGGTCAGCTATTGACACTTGGGCTGGGATTACTAGTCACAGCATTGA CTGCAGCTTACGTGACGCGGCTTGCAAAGGATGCGATAAAAGATATAGAGTAA
AA sequence Show only first row Show all	>Lus10006162 pacid=23148554 polypeptide=Lus10006162 locus=Lus10006162.g ID=Lus10006162.BGIv1.0 annot-version=v1.0 MPTLVINLRHLPSPPCIGPNHHHHHHHHHLSSPASTSSSSFPCRFRPNYTNRFNFLSPRSSLKQTRKKQQQQEKTDDPPQSLRWFLNSKGDDDDDDDNGE DGGKGESDDGGGDTGIKGKVLSVGVAGVLLVGVVGGFGGVGYVYRDQINDFLNQFSGFIEGYGPAGYAIFVAVYAGLEILALPAIPLTMTAGLLFGPLIG TIIVSISGTVAASVAFLIARYFARERILKLVDGNKKFLAIDKAIGENSFRIVTLLRLSPLLPFSLGNYLYGLTSVKFVPYFFGSWLGMLPGSWAYVSAGA LGRAIIKEESEIGLPEGNGQLLTLGLGLLVTALTAAYVTRLAKDAIKDIE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22850			SNARE associated Golgi protein...		Lus10006162 [exp]	0	1
AT2G44870			unknown protein		Lus10009575 [exp]	2.8	0.8900
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	3.3	0.9149
AT2G44310			Calcium-binding EF-hand family...		Lus10008649 [exp]	4.0	0.9010
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	5.5	0.9042
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	8.7	0.8447
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	9.4	0.9044
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10011849 [exp]	10.2	0.8333
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10013629 [exp]	12.3	0.8778
AT5G52420			unknown protein		Lus10027495 [exp]	14.1	0.8924
AT2G33855			unknown protein		Lus10015404 [exp]	15.2	0.8857

Compare expression of checked genes

Lus10006162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.