Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 51 / 1e-07 Protein of unknown function (DUF1442) (.1) AT2G45360 47 / 2e-06 Protein of unknown function (DUF1442) (.1) AT3G60780 47 / 3e-06 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041061 [exp] 373 / 1e-132 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10026776 [exp] 192 / 4e-63 ND / Lus10027191 [exp] 54 / 2e-08 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10031701 [exp] 53 / 3e-08 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10031122 [exp] 50 / 5e-07 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 45 / 1e-05 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098800 [exp] 89 / 2e-21 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.012G128900 [exp] 66 / 4e-13 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 58 / 3e-10 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 57 / 1e-09 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 54 / 8e-09 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 54 / 1e-08 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 51 / 9e-08 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 45 / 8e-06 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 45 / 1e-05 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10006163 pacid=23148567 polypeptide=Lus10006163 locus=Lus10006163.g ID=Lus10006163.BGIv1.0 annot-version=v1.0 ATGCCTTTCTCCATGGAAAACTGGTATCCTGACGATGCCATGAAAGCTTACTTGCACGCTCTCCACCTGAGGAAAGAGCGTGCTTTATCAATCATGGAGC CCAAGTGCATGGAGTTAGTGGCAGCTCTAGCAGCAGGGAAGAGATCAAAGTTAATGGTGGAGATAACCAAGTACTGCATCACCCCACTAACTATGGCTCT GGCCGTTGCGGCCAAGCAGACCGGCGGCAAAGTCATTGTGTACATTGTTGCCAATGGCTCTGATGATCAGGACAAAAAATGTCCTGATGATGAATTATTG GAGTTGATGGAGCTTGGAGATGTAGTGGAGCTTGTTTATGATGGTGATGAAGAAGACGAGTTAATGGTACTCAAGAAGTGTGAAGACGTGGACTTTGTGG TGGTGGATGGGGAGATAGAGAACCATATGGAGGTTATGAGGATGCTTGATGTGAACCCAGTTGGATCAATGGTGGTGGGTCACAACCTGAATAAGCAAGG GAGGGGTAAAGGTTGTTCCTTTGGAGAGGTTTTGACCAGGAATATTAATCAGAACAATAGTAAGAAAAGAGGAGGAGTTGCTTCTTCTTTTGTGAGTTTG CCGATTGGGGTTGGGATGGAGTTGACTAAGATTGGTTCTACTACCAAATTGCCTGCTGTTGGGGTTAGTAGGAAGTACAAGAGGTTTCATGTCACGTTTG AGAATTGA
AA sequence Show only first row Show all	>Lus10006163 pacid=23148567 polypeptide=Lus10006163 locus=Lus10006163.g ID=Lus10006163.BGIv1.0 annot-version=v1.0 MPFSMENWYPDDAMKAYLHALHLRKERALSIMEPKCMELVAALAAGKRSKLMVEITKYCITPLTMALAVAAKQTGGKVIVYIVANGSDDQDKKCPDDELL ELMELGDVVELVYDGDEEDELMVLKKCEDVDFVVVDGEIENHMEVMRMLDVNPVGSMVVGHNLNKQGRGKGCSFGEVLTRNINQNNSKKRGGVASSFVSL PIGVGMELTKIGSTTKLPAVGVSRKYKRFHVTFEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62280			Protein of unknown function (D...		Lus10006163 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	6.4	0.7997
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	8.1	0.7983
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	11.1	0.7809
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	12.8	0.7809
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	13.4	0.7759
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	15.7	0.7748
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	16.9	0.7640
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10027776 [exp]	17.2	0.5332
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	17.7	0.7497
					Lus10011637 [exp]	18.8	0.7600

Compare expression of checked genes

Lus10006163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.