Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45260 63 / 4e-11 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45250 63 / 5e-11 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G17930 61 / 2e-10 Aminotransferase-like, plant mobile domain family protein (.1) AT5G45060 61 / 2e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36140 60 / 4e-10 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19500 60 / 4e-10 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT2G17050 60 / 6e-10 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45050 57 / 5e-09 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45210 55 / 1e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 54 / 3e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014633 [exp] 250 / 1e-84 AT2G04865 61 / 2e-11 Aminotransferase-like, plant mobile domain family protein (.1) Lus10033313 [exp] 246 / 1e-80 AT1G17930 72 / 1e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005957 [exp] 236 / 6e-77 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10011276 [exp] 231 / 8e-76 ND 42 / 2e-04 Lus10022091 [exp] 229 / 7e-69 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10039393 [exp] 191 / 8e-60 AT1G17930 73 / 3e-14 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008761 [exp] 191 / 2e-58 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10021566 [exp] 179 / 1e-55 AT1G17930 54 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 179 / 1e-52 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070300 [exp] 72 / 5e-14 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 70 / 2e-13 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 70 / 2e-13 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 70 / 2e-13 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 69 / 5e-13 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 68 / 9e-13 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 68 / 9e-13 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 64 / 3e-11 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 63 / 4e-11 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 62 / 1e-10 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0022 [flax] [poplar] PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10006165 pacid=23148530 polypeptide=Lus10006165 locus=Lus10006165.g ID=Lus10006165.BGIv1.0 annot-version=v1.0 ATGTTCAAGCTCAGACTAATGAAGCTATATAATCCTGAAACATCCCAAAGCAATTTCAAAGTTCAACTTCTAGATGAACCGCTCCAAAGGTTATCTGATG AGCTGAGATGTCTGCGTTGGGATGGTTTCCCTTCAAAATCATTGGCATCAGACTTTAGTCCAGAGAAACTAGTGGAGCTTAATCTTCCTTTCAGCAATAT TGAACACCTATGGGCAGGAAGACAGGCTGATATAGTTAGGGCTCTCTGTATCCATCATGGGGATTTGAAGTTGCCAGTTGGAGGCGCTGCAGGTGGTGAT GCACGATACCCTTGGTTGAAGGGTGCTGCGATGCATGAGAAGTCGATGTTAGCCCTAGGGAGCGGTTTAGTGGATGAGGATGCATACAGGGTCTTCATGT TTTGTCTGCTGGGGTCGACTCTGTTCACTGATAAGTCCGTCGATCGTACTCGTCTGGTGTTGTGGGAGTATTTTTTGGGGGGCGTGTCCACTGTTTCGAG ATATGCTTGGGGGACTGGGGCTCTAGCATGGTTGTACCACGAGCTGGGTAAGGCGAGCAGGGCTAAGTGTAAGGGGATGGCGGGGAGTGTGTCTCTACTT CAGTCTTGGATTCACGAGTACTTCCCTAGTACTCGTGCTTTTAGACTAGTGGCTCGGGAGCGGAGTGATACCGAGGCCTTGGTTGGGCGGTGGAGCAGTA GCGAGCAACCAGATAGATCATACGACTTCATGCACCGTCGTCTGCTTGATGATATGACCGCATGGGATGTGATCTGA
AA sequence Show only first row Show all	>Lus10006165 pacid=23148530 polypeptide=Lus10006165 locus=Lus10006165.g ID=Lus10006165.BGIv1.0 annot-version=v1.0 MFKLRLMKLYNPETSQSNFKVQLLDEPLQRLSDELRCLRWDGFPSKSLASDFSPEKLVELNLPFSNIEHLWAGRQADIVRALCIHHGDLKLPVGGAAGGD ARYPWLKGAAMHEKSMLALGSGLVDEDAYRVFMFCLLGSTLFTDKSVDRTRLVLWEYFLGGVSTVSRYAWGTGALAWLYHELGKASRAKCKGMAGSVSLL QSWIHEYFPSTRAFRLVARERSDTEALVGRWSSSEQPDRSYDFMHRRLLDDMTAWDVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45260	WRKY	ATWRKY52, SLH1,...	SENSITIVE TO LOW HUMIDITY 1, R...		Lus10006165 [exp]	0	1

Compare expression of checked genes

Lus10006165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.