Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41540 98 / 5e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 93 / 2e-20 TAO1 target of AVRB operation1 (.1) AT5G22900 92 / 3e-20 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT5G17680 92 / 5e-20 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G44900 91 / 7e-20 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G63870 90 / 2e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 89 / 6e-19 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 88 / 1e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40910 87 / 2e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 87 / 3e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041060 [exp] 240 / 1e-70 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10037374 [exp] 199 / 4e-57 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 191 / 3e-54 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021412 [exp] 123 / 1e-30 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 119 / 4e-29 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021415 [exp] 110 / 7e-29 AT2G28180 127 / 2e-34 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) Lus10021413 [exp] 112 / 8e-27 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 102 / 2e-23 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 95 / 5e-21 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088500 [exp] 91 / 9e-20 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 91 / 9e-20 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G031899 [exp] 91 / 1e-19 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.003G194100 [exp] 87 / 2e-18 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194200 [exp] 85 / 1e-17 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.017G010800 [exp] 84 / 2e-17 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 84 / 3e-17 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G031101 [exp] 81 / 4e-16 AT5G17680 557 / 8e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.007G099000 [exp] 80 / 5e-16 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.003G084333 [exp] 79 / 6e-16 AT5G36930 347 / 2e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006166 pacid=23148561 polypeptide=Lus10006166 locus=Lus10006166.g ID=Lus10006166.BGIv1.0 annot-version=v1.0 ATGAGGGTCGATGACCTTTTTACCCTCTTTAGTACATCTGAATCTGATCTTGGTGGTGGGTTCCCAGCTGGCAAACTTTTCGACATTTCATCAATCTTCA TATCGCTTCTTGCTATATTTGTCATCGGCTTATTGCTGTCCCTTACTTGGATGCCTCCAATTGATTCTGTTATTCTGGCTCTCATCATGAGTTCCAAAGG CATTTATGAGTTTGGCATCTATAATCCCATCAGACACAATGAAGGCTCGAATGCATCTTTAAATGTACCGTCAACGTCTCCATACTCGGAGTGTGTGGTT TACATTGGAGGAAGAGATGATCATGAGGCCTTGTGTGCAGCAAAGCACATGGTTAAGGACTCAGCTCATCCGGAGCTCACTATTCTCCACCTAATTCCAA AAGAGCAGGGTAGTAATAGATCGGGGAAAGTCCCAGCAGCGGGCCATGAAAGATTGGTCGATGATGTGGTATTGAAACAAGCTTTGGAAGAAGTGGCTTC ATTACCAAATGTGCAGTATATTGACCAAGTAGTGGAAGATGGACATCAAACTGCTGTGGTGATTAGGTCCCTTGTGGAGATGGTAAGGAATGGGGTTGTA GAGTCACCTCAAACTACAGGGTTGGATGAATGGAGTGAATTTCCGGAACTTGAAGTAATTGGAGACCTATTGGCCTCTAAGGATATGATGACTAACGGTG TTGTACTCGTTGTTCAGCAACAAAGGCAAATCAAGGAAGAAGCGGCTCTGATTGAGCAGATCGTTCGAGATATCTCAGACAAAGTAATGTGCGCACCATC AACTGATGGTGGCGAGTTGGTTGGAATGGGTTCACGAGTTGAGGAAATGGATAGTCTCCTTCAGCTTGACATGAATGTTGTTCGTACGCTAGGGATCTGG GGATTGAGTGGCATTGGTAAGACGACCATATCCAGGGTTATGTTTGATAGGCATTGTAGACAGTTTGAAGCGAGCTGCTTTCTCTCAAATGTTGGAGACA AGTTTAGATCACAAGGTGAAGCTGCTCTACAGCACGAACTTCTTTCCAAGACCTTGTTGGAGAGGGATCTGAGCACATGGTCATTAGGATAA
AA sequence Show only first row Show all	>Lus10006166 pacid=23148561 polypeptide=Lus10006166 locus=Lus10006166.g ID=Lus10006166.BGIv1.0 annot-version=v1.0 MRVDDLFTLFSTSESDLGGGFPAGKLFDISSIFISLLAIFVIGLLLSLTWMPPIDSVILALIMSSKGIYEFGIYNPIRHNEGSNASLNVPSTSPYSECVV YIGGRDDHEALCAAKHMVKDSAHPELTILHLIPKEQGSNRSGKVPAAGHERLVDDVVLKQALEEVASLPNVQYIDQVVEDGHQTAVVIRSLVEMVRNGVV ESPQTTGLDEWSEFPELEVIGDLLASKDMMTNGVVLVVQQQRQIKEEAALIEQIVRDISDKVMCAPSTDGGELVGMGSRVEEMDSLLQLDMNVVRTLGIW GLSGIGKTTISRVMFDRHCRQFEASCFLSNVGDKFRSQGEAALQHELLSKTLLERDLSTWSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10006166 [exp]	0	1
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	2.8	0.9171
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	6.3	0.8919
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	9.4	0.8934
					Lus10034192 [exp]	9.4	0.9043
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	10.5	0.8992
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	10.6	0.9014
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	11.5	0.9024
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	15.7	0.8991
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	16.6	0.8907
AT5G47390	MYB		myb-like transcription factor ...		Lus10004384 [exp]	17.3	0.8986

Compare expression of checked genes

Lus10006166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.