Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07830 224 / 5e-70 Pectin lyase-like superfamily protein (.1) AT5G48140 220 / 2e-68 Pectin lyase-like superfamily protein (.1) AT3G14040 219 / 1e-67 Pectin lyase-like superfamily protein (.1) AT3G07820 214 / 3e-66 Pectin lyase-like superfamily protein (.1) AT1G02790 214 / 3e-66 PGA4 polygalacturonase 4 (.1) AT3G07850 213 / 4e-65 Pectin lyase-like superfamily protein (.1) AT3G07840 206 / 3e-63 Pectin lyase-like superfamily protein (.1) AT2G43890 182 / 6e-54 Pectin lyase-like superfamily protein (.1) AT1G78400 176 / 2e-51 Pectin lyase-like superfamily protein (.1) AT4G18180 172 / 8e-50 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041058 [exp] 521 / 0 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 520 / 0 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 292 / 7e-97 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 280 / 5e-92 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 281 / 6e-92 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 281 / 6e-92 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 270 / 1e-87 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 272 / 2e-86 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 243 / 6e-74 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066800 [exp] 256 / 1e-82 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 256 / 1e-82 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 256 / 1e-82 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 254 / 6e-82 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 254 / 6e-82 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 254 / 6e-82 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 253 / 2e-81 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 232 / 3e-73 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 190 / 9e-57 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 189 / 1e-56 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10006167 pacid=23148534 polypeptide=Lus10006167 locus=Lus10006167.g ID=Lus10006167.BGIv1.0 annot-version=v1.0 ATGGACCCATTTTCATCAAGCCAGAGTTTGAGATTGGAGCTATTGCAAAAACTAGTTTCGAATACAACATCTCAACATCCACTTGCTTCTCAATCGCCTG CTTCAGAGCCACTGGCGCCAGCTTTTCCTGGTGCCCCAACCGTTGGCACACCGTTCGATGTTACTACATTTGGCACTGTCGGTGATGAAAAGACTGATAT GATGCAGGCGTGTGCATCCCCGACGCCGGCGACAGTTATTGTACCAGAAGGAGAATTCTTGTCTGGGCTAGTTGTGGTGTCCGGTCCATGCAGATCCCCA ATTGGAGTCCAAGTTCTTGGTACAATTTACTCTAAAGATGCGATTCCTGGGGATAACTGGTTCGTCTTCAAGCGCGTCGATAATTTCGCACTTTTCGGGC CCGAACCTAAGATTCCAGTCGATCAACAACGGAATCTAACGGGAATAACGAGCAAAGACAGCAACTTCTTCCATATGTCGACGTTGGAGTGCAAGAACTT GACCTTCACAAAGCTCAAATTCCTTGCCCCAGCAGAAAGCGTCAACACAGACGGCATCCACCTCAGCGCTACAAGCGATGTCAACATCTTCGATGTGGAC ATCCAGACGGGAGACGACTGCAAGTACGCCAGCGAGAAGCCCGTATCCGGAATCTTCGTCAAGAATTGCACTCTCAAGAAAACTGTCAACGGGGTCAGGA TCAAGTCATGGCCCGCCCAGGAGGAAGGAGCCACCAGCGACATCCACTTCGAGGATATTACGTTGGAAGATGTCCAGAATCCCATCATCATCGATCAGGA GTACTGCCCTAATGGTCAATGCAAGTCCAAGGGGCCATCAAAGGTGAAAATAAGCAACATCAGCTTCAAAAATGTGCATGGGACAGCAGCAGAGCCAGAG GCAATAATAATTAAGTGCAGTAGTTTGAATCCATGCGACCAAATTGTGATGATTGATATTGACATCACTTCCCCGGCTGGCTCTGTCAAATCGGAGTGCG TCAATGTCAAGCCCATCGTTACAGGGAAACCGCTGCCACCTGGTTGCACCTAA
AA sequence Show only first row Show all	>Lus10006167 pacid=23148534 polypeptide=Lus10006167 locus=Lus10006167.g ID=Lus10006167.BGIv1.0 annot-version=v1.0 MDPFSSSQSLRLELLQKLVSNTTSQHPLASQSPASEPLAPAFPGAPTVGTPFDVTTFGTVGDEKTDMMQACASPTPATVIVPEGEFLSGLVVVSGPCRSP IGVQVLGTIYSKDAIPGDNWFVFKRVDNFALFGPEPKIPVDQQRNLTGITSKDSNFFHMSTLECKNLTFTKLKFLAPAESVNTDGIHLSATSDVNIFDVD IQTGDDCKYASEKPVSGIFVKNCTLKKTVNGVRIKSWPAQEEGATSDIHFEDITLEDVQNPIIIDQEYCPNGQCKSKGPSKVKISNISFKNVHGTAAEPE AIIIKCSSLNPCDQIVMIDIDITSPAGSVKSECVNVKPIVTGKPLPPGCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07830			Pectin lyase-like superfamily ...		Lus10006167 [exp]	0	1

Compare expression of checked genes

Lus10006167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.