Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47770 553 / 0 FPS1 farnesyl diphosphate synthase 1 (.1) AT4G17190 545 / 0 FPS2 farnesyl diphosphate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041057 [exp] 664 / 0 AT5G47770 565 / 0.0 farnesyl diphosphate synthase 1 (.1) Lus10022545 [exp] 431 / 6e-152 AT4G17190 444 / 3e-157 farnesyl diphosphate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003400 [exp] 618 / 0 AT5G47770 588 / 0.0 farnesyl diphosphate synthase 1 (.1) Potri.016G004100 [exp] 198 / 6e-64 AT5G47770 174 / 2e-54 farnesyl diphosphate synthase 1 (.1) Potri.004G090600 [exp] 44 / 8e-05 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10006168 pacid=23148555 polypeptide=Lus10006168 locus=Lus10006168.g ID=Lus10006168.BGIv1.0 annot-version=v1.0 ATGGCAGATATGAAGTCCACCTTCTTAAAGGTTTATGATCTTCTGAAGAAGGATCTCCTTGAAGATCCTGCCTTTGAATGGAGTCCTGATTCTAGTCAAT GGGTTGACAAGATGTTGGACTACAATGTGCCAGGAGGAAAGTTGAACAGAGGGCTATCTGTGGTTGACAGTTTCCAATTATTGAAAGAAGGAAAGGACTT AACTGAAGAAGAAATATTCCTTGCTAGCGCTCTTGGTTGGTGTATTGAATGGCTTCAAGCATATTTTCTAGTCCTTGATGACATCATGGACGGCTCTCAC ACTCGGCGTGGCCAACCTTGCTGGTTTAGGGTGCCCAAGGTCGGTCTCATTGCTGCAAATGACGGGATTGTGCTCCGTAATCATATTCCCAGGATCCTCA AAAAGCACTTCAGGAACAAGGCATACTATGTAGATCTTCTGGATTTGTTCAATGAGGTGGAGTTTCAAACTGCCCATGGACAGATGATTGATCTAATTAC TACACTCGAGGGAGAAAAGGATTTATCCAAATATACTTCGACACTCCACCGAAGAATCGTTCAGTATAAGACAGCATACTACTCCTTCTACCTCCCTGTT GCTTGCGCATTGCTAATGGCTGGTGAGAAACTCGAAGAACACGTTGAAGTGCAGAACGTTTTAGTTGATATGGGAACCTACTTCCAAGTGCAGGATGATT ATCTGGACTGCTTTGGGGATCCTGAGACTATTGGTAAGATAGGAACGGACATAGAAGATTTCAAGTGCTCTTGGTTGGTGGTGAAGGCTTTTGAAGTTAG CAATGAAGAACAAAAGAAACTGTTGCTTGAAAACTATGGGAAAGCTGACCCAGCCAATGTGGCTAAAGTGAAGGCCCTCTACCATGACTTGAATCTTCAG GGAGTGTTCGCTGAGTACGAGAGCAAAAGCTACGAGAAGCTGATAACCTCCATTGAAGCTCATCCTAGCAAAGCAGTGCAAGCAGTGTTGAAGTCATTTC TGGCGAAAATTTACAAGAGGCAGAAGTGA
AA sequence Show only first row Show all	>Lus10006168 pacid=23148555 polypeptide=Lus10006168 locus=Lus10006168.g ID=Lus10006168.BGIv1.0 annot-version=v1.0 MADMKSTFLKVYDLLKKDLLEDPAFEWSPDSSQWVDKMLDYNVPGGKLNRGLSVVDSFQLLKEGKDLTEEEIFLASALGWCIEWLQAYFLVLDDIMDGSH TRRGQPCWFRVPKVGLIAANDGIVLRNHIPRILKKHFRNKAYYVDLLDLFNEVEFQTAHGQMIDLITTLEGEKDLSKYTSTLHRRIVQYKTAYYSFYLPV ACALLMAGEKLEEHVEVQNVLVDMGTYFQVQDDYLDCFGDPETIGKIGTDIEDFKCSWLVVKAFEVSNEEQKKLLLENYGKADPANVAKVKALYHDLNLQ GVFAEYESKSYEKLITSIEAHPSKAVQAVLKSFLAKIYKRQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10006168 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	1.7	0.9497
AT5G59410			Rab5-interacting family protei...		Lus10040798 [exp]	2.0	0.9456
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	2.0	0.9472
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10011819 [exp]	2.6	0.9420
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	9.8	0.9428
AT2G21340			MATE efflux family protein (.1...		Lus10017498 [exp]	9.9	0.9117
AT3G49650			P-loop containing nucleoside t...		Lus10019245 [exp]	13.4	0.9402
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10027775 [exp]	13.9	0.9122
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10028992 [exp]	14.1	0.9461
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	14.8	0.9439

Compare expression of checked genes

Lus10006168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.