Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 391 / 2e-130 MATE efflux family protein (.1) AT1G66780 376 / 2e-124 MATE efflux family protein (.1) AT1G64820 375 / 9e-124 MATE efflux family protein (.1) AT1G66760 366 / 7e-121 MATE efflux family protein (.1.2) AT2G04040 361 / 7e-119 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04080 358 / 7e-118 MATE efflux family protein (.1) AT1G15150 355 / 3e-116 MATE efflux family protein (.1) AT1G15170 353 / 2e-115 MATE efflux family protein (.1) AT2G04090 352 / 2e-115 MATE efflux family protein (.1) AT2G04100 352 / 6e-115 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041053 [exp] 671 / 0 AT1G71140 395 / 5e-134 MATE efflux family protein (.1) Lus10009140 [exp] 427 / 2e-144 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 427 / 4e-144 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 409 / 5e-137 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10042732 [exp] 395 / 5e-132 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 395 / 2e-131 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 390 / 5e-130 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 400 / 3e-128 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 399 / 1e-127 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075800 [exp] 474 / 7e-164 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.017G120400 [exp] 439 / 5e-149 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.004G094900 [exp] 427 / 2e-144 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120500 [exp] 425 / 1e-143 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120600 [exp] 423 / 5e-143 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.010G116900 [exp] 416 / 7e-140 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G094800 [exp] 412 / 3e-139 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.004G093400 [exp] 411 / 2e-138 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 407 / 1e-136 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.008G126500 [exp] 398 / 7e-133 AT1G15170 546 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28 CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10006171 pacid=23148565 polypeptide=Lus10006171 locus=Lus10006171.g ID=Lus10006171.BGIv1.0 annot-version=v1.0 ATGGAGGGTAGGAGTAGTAAATGGGTGGTGTGTCTGAATGAGGTGAAGACAGTGAGCTTAGTTGCTGCTCCAATGGTGGTTGTCACTGTGTTGCAGTTCC TTGTCCAGTTTGTTGCAACTATGATGGTTGGCCACCTCGACCAGCTCTCCCTCTCCGCTGCCTCCATTGGTGCTGCTTTCTCCCTTGTTACAGGCTTCAC CGTGCTTGCTGGGATGGCGGGTGGACTGGAGACACTATGTGGGCAAGCATATGGGGCAGAGCAATACCACAAGCTAGGAACTTACATGTATTCTGCCATA ACATCTATGACCCTGGTCTGTTTCCCAATCTCCATCTTGTGGATATTCACAGACAAGTTCCTCATCCTAGCTGGACAAGACCATTTGATCTCGATCCTAG CTCGGAAATACTCCATTTGTCTGGTTCCAGGCCTGTTTGGTTCAGCTATGCTTCAGGCCATGACGCGTTACTTCCAAACACAGAGCTTGATCCTTCCCAT GCTTTTTGCTTCTCTTGCAACAATGTGTCTCCACGTCCCACTTTGCTGGTTTCTTGTCTTCAAAACCGGGTTGAGATACTTGGGTGCTGCTTTGGCTGTT AGCATATCCACCTGGGCTAATGTCATCTTACTTGTGATTTACATGACTTGCTCATCCAAATGTTCAAAGACTCTTTCCAAGTCCAAGTTCAGGGATCTCT ACTTGGGCACTGCGGAGTTCTTGCGCTTTGCCATTCCTTCTGCAATGATGACCTGTCTGGAATGGTGGTCATATGATTTGCTTATTTTGCTTGCTGGACT CTTACCAAATCCCAAGTTGGAATCTTCTGTGATTTCCATATGCTTCTCAATCACTTACTTGCACTACTACATTCCATATGGGTTTGGAGCTACTATAAGT ACGAGGGTGTCGAACGAGTTGGGAGCAGGGAAACCAAAGGCTGCTAAGATGGCAGTTCAGGCTGTAATGATTCTGGCAATAATAGAACTAGCTGTTGTAA TCCTACCCCTCTTCCTATGTCGACACATTTTGGGGTATGTTTTCAGCAATGACAAGGAAATTGTGGACTACGTTGCTGACATGGCTCCTTTCATGTGCCT CTCAGCCACCATGGACACATTACAATCTGTTCTTTCAGGGGTTGTGAGAGGAAGTGGGAAGCAGAACTTGGGGGCATTTGTGAATCTTGGGGCTTATTAT GTTGTTGGGACACCATTGGCTGTTGTATTGGCATTTGTTGCACATTTAAGAGGGAAAGGATTGTTGATTGGATTAGCAACTGGATCAGGTCTACAAGCTA CTATGTTTGCAGTCAGAATATTTCTCACAGATTGGGAACAGCAGAATGAGCAAAACATCGGCAAGGGCACTTTTGATGGCCTGGGCACGGCTGCATGGGA TAAGAATGATTGTGCCAAGAATAACAACTGCAAGAACCTTCCTTTCAATTTACGGTTCAACTTCGTAAAGCAAGCACCAATTGAAGGAGTGACATTCAAG GACAGTAAGAACTTCAATGTCAACGTACTGGGTTGCGAGAACATCACTTTCTGCAACTTCCACGTGGGTGCACCAGAGGAAAGCCCCAACACAGATGGAA TCCACATGGGAAAGTCCACTGGAGTCAGCATCATAGATCCCACATCCGAGACAGGTTATGACTGCATATCCATTAGAGATGGTATTAAACAACTCAGGAT CGAGAACGTCAAGTGTGGACCTGGACATGAAATCAGCATTGGTAGCCTTGGTGAGAAGCCCTGGGGAAGAGCCTGTTGTAGGAGTGTTCGTCAAAAATTG TACCTTAACCAACACTCAAAATGGAGTAAGGATTAA
AA sequence Show only first row Show all	>Lus10006171 pacid=23148565 polypeptide=Lus10006171 locus=Lus10006171.g ID=Lus10006171.BGIv1.0 annot-version=v1.0 MEGRSSKWVVCLNEVKTVSLVAAPMVVVTVLQFLVQFVATMMVGHLDQLSLSAASIGAAFSLVTGFTVLAGMAGGLETLCGQAYGAEQYHKLGTYMYSAI TSMTLVCFPISILWIFTDKFLILAGQDHLISILARKYSICLVPGLFGSAMLQAMTRYFQTQSLILPMLFASLATMCLHVPLCWFLVFKTGLRYLGAALAV SISTWANVILLVIYMTCSSKCSKTLSKSKFRDLYLGTAEFLRFAIPSAMMTCLEWWSYDLLILLAGLLPNPKLESSVISICFSITYLHYYIPYGFGATIS TRVSNELGAGKPKAAKMAVQAVMILAIIELAVVILPLFLCRHILGYVFSNDKEIVDYVADMAPFMCLSATMDTLQSVLSGVVRGSGKQNLGAFVNLGAYY VVGTPLAVVLAFVAHLRGKGLLIGLATGSGLQATMFAVRIFLTDWEQQNEQNIGKGTFDGLGTAAWDKNDCAKNNNCKNLPFNLRFNFVKQAPIEGVTFK DSKNFNVNVLGCENITFCNFHVGAPEESPNTDGIHMGKSTGVSIIDPTSETGYDCISIRDGIKQLRIENVKCGPGHEISIGSLGEKPWGRACCRSVRQKL YLNQHSKWSKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71140			MATE efflux family protein (.1...		Lus10006171 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	3.2	0.7438
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10009967 [exp]	8.1	0.6589
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	12.0	0.7292
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10035318 [exp]	20.0	0.5861
AT1G49230			RING/U-box superfamily protein...		Lus10006787 [exp]	20.3	0.6659
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10030938 [exp]	23.0	0.5924
AT3G15630			unknown protein		Lus10017768 [exp]	27.3	0.6449
AT2G01913			unknown protein		Lus10035103 [exp]	36.3	0.6565
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	36.8	0.6340
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	36.9	0.6152

Compare expression of checked genes

Lus10006171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.