Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33760 79 / 6e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G71450 69 / 3e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 50 / 3e-08 AP2_ERF ATERF38 ERF family protein 38 (.1) AT5G11590 48 / 3e-07 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G16750 47 / 7e-07 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 45 / 2e-06 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 44 / 5e-06 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 43 / 2e-05 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 43 / 2e-05 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 41 / 9e-05 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041052 [exp] 190 / 3e-62 AT1G33760 143 / 3e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10002953 [exp] 111 / 1e-31 AT1G33760 143 / 2e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10003513 [exp] 104 / 6e-29 AT1G33760 140 / 2e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10041050 [exp] 72 / 3e-16 AT1G71450 189 / 1e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10006173 [exp] 60 / 7e-12 AT1G71450 167 / 4e-53 Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 51 / 3e-08 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10027722 [exp] 47 / 8e-07 AT4G25470 136 / 6e-40 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Lus10043240 [exp] 46 / 2e-06 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 45 / 2e-06 AT2G35700 144 / 7e-44 ERF family protein 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075600 [exp] 104 / 8e-29 AT1G33760 147 / 6e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.003G054100 [exp] 101 / 7e-28 AT1G71450 144 / 8e-44 Integrase-type DNA-binding superfamily protein (.1) Potri.013G101200 [exp] 101 / 1e-27 AT1G33760 149 / 1e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.013G101100 [exp] 92 / 3e-24 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.019G075500 [exp] 80 / 2e-19 AT1G71450 200 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G181500 [exp] 79 / 3e-19 AT1G71450 184 / 8e-60 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 50 / 5e-08 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 49 / 1e-07 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.019G067400 [exp] 48 / 3e-07 AT5G25810 120 / 6e-34 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 43 / 2e-05 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006172 pacid=23148546 polypeptide=Lus10006172 locus=Lus10006172.g ID=Lus10006172.BGIv1.0 annot-version=v1.0 ATGGCTCGGCAGCTACGCCACTCCCGAAATGGCAGCGGCAGCCTAGATAGGGGCGGGCCAGCGGACGACACGGCCGCATTGTACCTCCGTGGGCTTGAGG GTGGGGCCCAACTCAACTTCCCGGAGCTGGCCCACTCCCTGCCCCGACCGGCCAGCTCGAGCGTCGAGGACGTCCAGACGGCGGCGCAACAAGCTGCGGC GTTGATGATAATAACCCGGAAGCCGGATCCCTCGCCGGGAGTGGAGACGGCTGGTCGTTTTGGGCTGAGGCCGGTGCGGATCGGGTTATCACCCAGCCAA ATCCAGGCGATTAACGAGACGCCGATGGATTCACCCAATATGTGGATGGAGTTAGCAGGAGGAGCTGTGTTTTTGGGAAGCTACTACGACACAGTTCCAA TGAATTTGGATGGGCTGGTTATATGA
AA sequence Show only first row Show all	>Lus10006172 pacid=23148546 polypeptide=Lus10006172 locus=Lus10006172.g ID=Lus10006172.BGIv1.0 annot-version=v1.0 MARQLRHSRNGSGSLDRGGPADDTAALYLRGLEGGAQLNFPELAHSLPRPASSSVEDVQTAAQQAAALMIITRKPDPSPGVETAGRFGLRPVRIGLSPSQ IQAINETPMDSPNMWMELAGGAVFLGSYYDTVPMNLDGLVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	0	1
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041052 [exp]	2.4	0.8729
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10001711 [exp]	4.0	0.7977
AT5G44310			Late embryogenesis abundant pr...		Lus10028304 [exp]	5.7	0.7898
AT3G09450			unknown protein		Lus10025334 [exp]	6.2	0.8199
AT4G01140			Protein of unknown function (D...		Lus10007859 [exp]	7.1	0.7963
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	9.6	0.8181
AT5G47830			unknown protein		Lus10018732 [exp]	13.7	0.7823
					Lus10016420 [exp]	15.1	0.7950
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	18.3	0.7731
					Lus10002646 [exp]	18.8	0.7045

Compare expression of checked genes

Lus10006172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.