Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71460 459 / 3e-157 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G11290 223 / 1e-65 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 223 / 4e-65 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 220 / 9e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 213 / 8e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 211 / 6e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 201 / 5e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22150 202 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 201 / 1e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 197 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041049 [exp] 763 / 0 AT1G71460 796 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10001220 [exp] 235 / 1e-69 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 228 / 5e-67 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 223 / 5e-65 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 217 / 3e-64 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 215 / 2e-62 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 210 / 4e-62 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 214 / 2e-61 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 211 / 2e-60 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075400 [exp] 532 / 0 AT1G71460 886 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G191000 [exp] 232 / 1e-68 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 228 / 3e-67 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 217 / 3e-63 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 214 / 7e-63 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 211 / 1e-60 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G007800 [exp] 203 / 4e-58 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 201 / 2e-57 AT3G22690 582 / 0.0 unknown protein Potri.015G047600 [exp] 201 / 3e-57 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 200 / 7e-57 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006174 pacid=23148573 polypeptide=Lus10006174 locus=Lus10006174.g ID=Lus10006174.BGIv1.0 annot-version=v1.0 ATGATTGCTGGTTTCGCCCACAATAGACCCCAACTTGAGGCATTGGATTGCGTAAGGTGGATGATGGATGAAGGAAGCTTTCCGAATTTGGTTATCTTAA CAACGATTCTTCCGGCCATAGGTGAAGTGAAGGCTAGAAGAATAGTACTGGAGGTTCATGGCTTCATTCTGAAGGAAAGGACTCTTTCTAGGGAGATAAC TCTTCAGACTGGATTGATTGACATGTACTGCAAATGTGGCGATTTGACTTCTGGGAGGAGCGTTTTTTACAGCACCAAGAACCGAAATGTGGTTTCCTGG ACTGCTTTGATGTCAGGGTATGTTTCTAACCGTCGATTCGAGCAGGCATTGAGATCAGTGGTTTGGATGCAGCAAGAAGGTTTTCGTCCTGACGTGATCA CAGTTGTAACCGTCCTGCCAGTCTGTGGAAAGTTGCAGGCTTTCAAGCAAGGGAAGGAAATACATTCTTATGCTGTGAGAAGGTGTTTCTTCCCTAATGT ATCGGTAACCACTTCCCTGATCAAAATGTACTCGGATTGCAGTGTTCTTGATTATTCGATCAAGTTGTTTGACGCAACGGAGAGTAGGAATGCTATATCT TGGACGTCGATGCTGAATTCCTATGTGGAAAAGGGGTTTATAAAAGAAGCATTCCAACTGTTCAGGTCAATGCAGCTTTCGAAATCCCGGCCAGATTCCG TGACATCAGCTATGATTCTAACCGCCTGTGGTGAGTGTAAAGCTTCAAACCTTGGAAAGGAGATCCATGGACAGCTTCTGAAGAAAAGGCTAGTGGCCGT CCCTTCTGTATCGGCGGGGATCATCAGGATGTATGGAAGTTGTGGATTGATTGGTTACGCTAGGTCGGTCTTTGATACGGTATCTAGCAAGGGGTCGAGG ACTTGGACTGCCGTTATAGAGGCACACGGATATAACAACCTCTATGAAGATTCAATGAGTTTGTTCAAAGAGATGACATCTCGCGGTTGTGCTCCTACCC AGTTCACGTTCGATGTGGTTCTACCGATATGTGGGCGAGCGGGATTGACGGACGATGCTTGCTGGATTGTCAAGCTAATGAGACGGAGATATGATGTGAA TGTTACAGAAGAACACTGTTCTATAGTCGTTGGACTTCTCAACTCGTGTGGCCGCTCTGCAGAGGCAGAGAGGTACGCGAAAATGATGGCATGA
AA sequence Show only first row Show all	>Lus10006174 pacid=23148573 polypeptide=Lus10006174 locus=Lus10006174.g ID=Lus10006174.BGIv1.0 annot-version=v1.0 MIAGFAHNRPQLEALDCVRWMMDEGSFPNLVILTTILPAIGEVKARRIVLEVHGFILKERTLSREITLQTGLIDMYCKCGDLTSGRSVFYSTKNRNVVSW TALMSGYVSNRRFEQALRSVVWMQQEGFRPDVITVVTVLPVCGKLQAFKQGKEIHSYAVRRCFFPNVSVTTSLIKMYSDCSVLDYSIKLFDATESRNAIS WTSMLNSYVEKGFIKEAFQLFRSMQLSKSRPDSVTSAMILTACGECKASNLGKEIHGQLLKKRLVAVPSVSAGIIRMYGSCGLIGYARSVFDTVSSKGSR TWTAVIEAHGYNNLYEDSMSLFKEMTSRGCAPTQFTFDVVLPICGRAGLTDDACWIVKLMRRRYDVNVTEEHCSIVVGLLNSCGRSAEAERYAKMMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006174 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	7.2	0.7424
AT5G02710			unknown protein		Lus10015040 [exp]	7.6	0.7525
AT2G31100			alpha/beta-Hydrolases superfam...		Lus10000983 [exp]	9.0	0.7033
AT2G32180		PTAC18	plastid transcriptionally acti...		Lus10035307 [exp]	14.6	0.7795
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	17.5	0.6815
					Lus10021618 [exp]	18.9	0.7432
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	21.2	0.6849
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	23.0	0.6744
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	23.9	0.6785
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10009746 [exp]	29.3	0.5852

Compare expression of checked genes

Lus10006174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.