Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71460 299 / 1e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G46790 105 / 4e-25 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G21090 100 / 2e-23 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G50390 100 / 3e-23 EMB3141 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G13600 100 / 3e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 99 / 7e-23 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13770 97 / 3e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 96 / 4e-22 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37170 95 / 2e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55740 94 / 4e-21 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041049 [exp] 601 / 0 AT1G71460 796 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10001230 [exp] 116 / 6e-29 AT1G19720 890 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033713 [exp] 102 / 4e-24 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031714 [exp] 100 / 2e-23 AT4G25270 672 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 100 / 2e-23 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008618 [exp] 99 / 5e-23 AT4G33990 367 / 4e-117 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 99 / 6e-23 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039117 [exp] 99 / 9e-23 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032922 [exp] 97 / 2e-22 AT3G26540 509 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075400 [exp] 334 / 2e-110 AT1G71460 886 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G128800 [exp] 112 / 7e-28 AT4G25270 664 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G052300 [exp] 104 / 6e-25 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G030200 [exp] 104 / 6e-25 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G095100 [exp] 103 / 9e-25 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G037600 [exp] 103 / 1e-24 AT3G46790 997 / 0.0 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 102 / 2e-24 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 101 / 8e-24 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 100 / 1e-23 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G066100 [exp] 100 / 3e-23 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006175 pacid=23148536 polypeptide=Lus10006175 locus=Lus10006175.g ID=Lus10006175.BGIv1.0 annot-version=v1.0 ATGGAAGCAACACAATTCCTACACGTATCTCCCCATCTCCACTTTCTGCTTCCAAATCCTATCCACTGCAACTCCGCCAAGCACCAAATCGACAAGTTCA GATGTTCCGTTGCAACTCCGGAACTCGTCTCTCGCAACTTCGACAACAAGTACCCACGGAAACTCTTCTTCCGAAACCGCTCAAAGCAGCAGCGGCGGAA GCCATTCAAGGAGAAAGATGCATTCCCGGAATCCCTCCCGCTCCACAACAGAAACCCACGAGCCATTTACAAAGACATCCAGAGACTGGTCCGGACCGAC AAGCTGCCTCAAGCCCTAGCGGTAATGGACTATGTCGAGCAGCAGGGGATCCCTGTCAATGTCACCACTCTATCAGCCCTCATTGCCGGTTGCATTCGGA CGAAGTCGTTGGCTGACGCCAGGCAGGTTCACTCCCATATTAGGATCCACGAGTTAGAAGGCAACGAGTTCTTGAAGAACAAATTGGTCCATATGTACAC TGCTTGCAGGTCGATTGATGATGAACGCAAGGTGTTCGACGAATGTCTTTCGAGCAATGTCTATTCGTGGAATGCTTTGATTAGAGGGACTGTGATATCG GGTAAGAAGAGGTATGGAGATGTAGTGTCTGCTTATGGGGAGATGAGGGAAATGGGTATTGAGCCAAATGAGTATACTTTCTGTAATGTCATCAAGAGCT TTGCCGGTGCATCGGTTTTTAAGCAAGGGTTGAAGACTCATGCGATGCTGGTGAAGAGCGGGTGGATCGGTAGCTCGATTCTTAAAACCGGTTTGATTGA CTTGTATTTTAAATGCGGGAATATCCGGTTTGCTCACCAAATGTTCGACGAAATGCCTGAAGCAAAAGACAGTACTCTGTAG
AA sequence Show only first row Show all	>Lus10006175 pacid=23148536 polypeptide=Lus10006175 locus=Lus10006175.g ID=Lus10006175.BGIv1.0 annot-version=v1.0 MEATQFLHVSPHLHFLLPNPIHCNSAKHQIDKFRCSVATPELVSRNFDNKYPRKLFFRNRSKQQRRKPFKEKDAFPESLPLHNRNPRAIYKDIQRLVRTD KLPQALAVMDYVEQQGIPVNVTTLSALIAGCIRTKSLADARQVHSHIRIHELEGNEFLKNKLVHMYTACRSIDDERKVFDECLSSNVYSWNALIRGTVIS GKKRYGDVVSAYGEMREMGIEPNEYTFCNVIKSFAGASVFKQGLKTHAMLVKSGWIGSSILKTGLIDLYFKCGNIRFAHQMFDEMPEAKDSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006175 [exp]	0	1
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	1.4	0.8800
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	8.8	0.8336
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	9.4	0.8851
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	9.8	0.8444
AT5G24650			Mitochondrial import inner mem...		Lus10032959 [exp]	11.6	0.8169
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	16.9	0.8691
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10006962 [exp]	17.0	0.8523
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	20.6	0.8753
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	21.9	0.8116
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	29.1	0.8408

Compare expression of checked genes

Lus10006175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.