Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10030 225 / 5e-68 alpha/beta-Hydrolases superfamily protein (.1) AT1G71480 107 / 2e-26 Nuclear transport factor 2 (NTF2) family protein (.1) AT3G52570 77 / 4e-15 alpha/beta-Hydrolases superfamily protein (.1) AT5G41470 49 / 5e-06 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041047 [exp] 369 / 2e-123 AT4G10030 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041048 [exp] 280 / 6e-91 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10016992 [exp] 70 / 3e-12 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10021315 [exp] 69 / 5e-12 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) Lus10022691 [exp] 56 / 2e-08 AT3G52570 224 / 5e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10014220 [exp] 45 / 0.0002 AT3G11510 236 / 4e-78 Ribosomal protein S11 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074600 [exp] 224 / 1e-67 AT4G10030 485 / 5e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G074800 [exp] 131 / 7e-35 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G100600 [exp] 111 / 5e-28 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G076550 [exp] 66 / 7e-12 AT3G52570 327 / 9e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G100500 [exp] 49 / 4e-06 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 45 / 9e-05 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006176 pacid=23148564 polypeptide=Lus10006176 locus=Lus10006176.g ID=Lus10006176.BGIv1.0 annot-version=v1.0 ATGAGGTCCACCGTACCACCATTACCCTCGACGATTCCCATTTCTTCCCACTACTACTTCCCCGTAACTCACGCTGTTACCCTCCTCCACCGGAGCCTCA AAACAACTGATCGGAACAATTCGGTCCCAGCACCCCGTTCGTCGCACAACAACAACAGAGTACTTGTCGTGGCCGCCGTCGCGCCTACCTCGCCGCCAAT TGAAGATGCTTCGGCCGCCGTGCCTTCCGGAGCTGACGTATTCAGGAGATTCTACGACGGAATCAACTCCCGGGATCTGGAGGCGGTGGAGGAGCTCATC GTTGACAAGTGTGTTTACGGGATCTTATCTTCCCCCGTCCCTTCGTTGGTCGCGATACTGGAATTCTTCAACAAGTTCATAGACTCAATCAGCGGGGATC TCAAGTTTTCCATGGATGATATATCTTCTCAAGATTCCTCAGCCGTTGGAGTTACCTGGCATTTGCGTACTGTTGTGCAATTTTTTTATTATGAGAATGG AAGGATAAGCCTTTTCCGTTCAGTAAAGGGTGCAGCTTTTACCGGCTGGAGTTACGGAAGGGATAGCGTGGAGCCTGCACTGAAGCCTGGAGAAGCAGCT TTGGGGCGTGAATTGGTTACTGCGACAGTTCCCGTAGCTAGCAGACCGGCTTCCTCAATGAGCTTCCAACCTACATGCCAAGAGTTTCACTCATTCTTCA TTGCCCTAAAAACCTTCGCCCGTACTCTTCGGCGTCTCAAACAACTGCAGTATTGTTTACTTCTCTCGTCTCCACCGCGGTGTGTATTCCCGTCAGCTGA CCAGGGGAACAGAATGTCGTCGGTGATCTCCACATTCACAGCTTCCGGTAAAAGCGGAACCTTGTTGCATTCCGTCGAAAAGACTCCTGGTTCGAATTCC GCAGCTTCCATTTCTCAAATTTCCTTGCGGCATGCTCAGAATGAAGCATTCGGAATCTCCCGACTATCCCTGAGATGTTCGAGCCGAGTGGTTAAAGACC GAACTGTGCGAATGGCGTTGGTTGATGAGAGAAGGCTCGCTCGCAGCACAAGAGTGGTAGAGCCGTCAGGAGTTTTGGCGTACGAGCTTGTTCAAGGACC ACTTGTAGAATGCAGTTCATCAATGGACAAATCGGTAGCTGATCCACCCACAGCTGTACTTCTGCATGGGATTCTTGGTAGCCGAAAGAATTGGGTTGTT CTAAGCATGGTGGATCAGGCTGTCAAACCTCTTGCAAGACCAATTAGAGTGTGGGTTTTAGATGCGACTCCTGGAAAGGTCCGAGCAGAGGGTGACGGAG AAGATCATCCTTTTGAACTTATATCCTTCTCAAGAAGATTGCTGGAAGAGGTCACTTCAAAAAGAGAAGTTGTAAGTGCACTTCTCAGAGAGGGATTTTC TAAAGATGTTGCACAGTGGGTAGTAACTAATCTTCGACCAAGTGGACCTCCATCATCACCGTTGTCAAAGTTTCATGGACGTTTGATCTTGATGGGATAT CAGAAATGTACAGTTCCTATGAAGAAGCTAATCTATGGTAATCCTGAGCTGGAGCAATTTGCCGGATTGACATGGAATTGTCCGGAGAGGAGCTTGCACA GATGGGCTTTGGAAGATGTTCAAAGAATTCACGCTGTAGAAGATATTGCTTCAGAGGAAGGAGGTGGAGTAGAAATGCAAGTTCTCGAAGATGCAGGCCA CTGGGTACATACTGATAATCCAGATGGGCTCTTCAGAATTCTCTCGCCTTCGTTCCAGGCATTCAAAACCTGA
AA sequence Show only first row Show all	>Lus10006176 pacid=23148564 polypeptide=Lus10006176 locus=Lus10006176.g ID=Lus10006176.BGIv1.0 annot-version=v1.0 MRSTVPPLPSTIPISSHYYFPVTHAVTLLHRSLKTTDRNNSVPAPRSSHNNNRVLVVAAVAPTSPPIEDASAAVPSGADVFRRFYDGINSRDLEAVEELI VDKCVYGILSSPVPSLVAILEFFNKFIDSISGDLKFSMDDISSQDSSAVGVTWHLRTVVQFFYYENGRISLFRSVKGAAFTGWSYGRDSVEPALKPGEAA LGRELVTATVPVASRPASSMSFQPTCQEFHSFFIALKTFARTLRRLKQLQYCLLLSSPPRCVFPSADQGNRMSSVISTFTASGKSGTLLHSVEKTPGSNS AASISQISLRHAQNEAFGISRLSLRCSSRVVKDRTVRMALVDERRLARSTRVVEPSGVLAYELVQGPLVECSSSMDKSVADPPTAVLLHGILGSRKNWVV LSMVDQAVKPLARPIRVWVLDATPGKVRAEGDGEDHPFELISFSRRLLEEVTSKREVVSALLREGFSKDVAQWVVTNLRPSGPPSSPLSKFHGRLILMGY QKCTVPMKKLIYGNPELEQFAGLTWNCPERSLHRWALEDVQRIHAVEDIASEEGGGVEMQVLEDAGHWVHTDNPDGLFRILSPSFQAFKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	0	1
AT1G16040			unknown protein		Lus10015585 [exp]	1.4	0.8476
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	7.4	0.7952
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	8.9	0.7617
					Lus10033126 [exp]	9.2	0.7915
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	10.2	0.7672
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	11.7	0.7863
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	18.2	0.7717
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	19.3	0.8057
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	20.0	0.7578
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10036312 [exp]	21.6	0.7023

Compare expression of checked genes

Lus10006176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.