Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 155 / 1e-45 Protein of unknown function (DUF506) (.1) AT2G20670 139 / 4e-39 Protein of unknown function (DUF506) (.1) AT3G07350 108 / 2e-27 Protein of unknown function (DUF506) (.1) AT4G14620 105 / 3e-26 Protein of unknown function (DUF506) (.1) AT3G25240 104 / 4e-26 Protein of unknown function (DUF506) (.1) AT1G62420 100 / 8e-25 Protein of unknown function (DUF506) (.1) AT2G39650 99 / 6e-24 Protein of unknown function (DUF506) (.1) AT2G38820 96 / 6e-23 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT1G12030 94 / 3e-22 Protein of unknown function (DUF506) (.1) AT3G22970 87 / 1e-19 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041046 [exp] 529 / 0 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 136 / 6e-38 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10011174 [exp] 136 / 1e-37 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 134 / 3e-37 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 119 / 1e-31 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 117 / 9e-31 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 101 / 9e-25 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10014718 [exp] 102 / 1e-24 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10035594 [exp] 99 / 7e-24 AT1G62420 179 / 3e-54 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074400 [exp] 258 / 5e-86 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 258 / 2e-85 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.013G129900 [exp] 145 / 1e-41 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 142 / 4e-40 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.004G044300 [exp] 139 / 5e-39 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 134 / 3e-37 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.004G184700 [exp] 102 / 3e-25 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.005G058200 [exp] 100 / 3e-25 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 102 / 1e-24 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 100 / 3e-24 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10006177 pacid=23148543 polypeptide=Lus10006177 locus=Lus10006177.g ID=Lus10006177.BGIv1.0 annot-version=v1.0 ATGGATCGTCTTCAGGTGAACATTCTGAACCCTCCTGTTAAGGAAGGATTCTTCAAGGCTCTTGATGTTCATCATCATCAACTCACCTCATCTAATAATC TGGACATTGTTGTTAACAATTTCCGTTATCATTCTAGTAATGGAAATGACGAGAATGGCAAAGGGTATTTGCAAGCTGCCGATTTGGAGGATTGGGACGC CGCCGCCGACGATGGCCATTCGCCGGAGGACGACCCCGACAGCATTCTGTTCTGGGAATCGCAGGAGTCCTTGCTTCAGGAGGTTCTAGAACGCCATAGC TCATCAAGTTTAAAGCTTAGGCAAGAAGTTGGGAGGATCATAGGGCTGGCAAAGCACACTGATTTCTGCAGCTGTCTTAATCCGGACACCCAAGGATGCA CCAATTGCTTGCGTCACAAGGTAGTCGATATGCTTTCGCAAAAACGATTCGATGCCACTATCTGTACATCACAATGGAAGAACACCAGAGAATTCCCAGG AGGTAAGCACGAGTATATCAAGCTGATCGCGAGCACAAGCACGAAAAAGAAGAAGATACCGTATCTGGTGGAGCTGGAGTTGAAGGATCAATTCGAGATA GCGAAACCGTGTGAACAGTACAGAAGGATGGTCTCCCAGCTGCCAGAATACTACATCGGAAAAGCAGACTGCCTCAACGCCATTGTACGAATTCTTTGCG AAGCGGCCAAGAGGTCGATGAAGGAGCAGAAGATCCATATGGGACCTTGGAGGAAGAGGAGCTTCATGCAGATGAAATGGTCGATTTCTTCACCCAAACC GGAGGATTCTCCTCTTGCCGGTAGGAAGCTTCCGCTTCCAATGCCAGACTTGGAATCCTCTCCAGTTGCAGCTGTTGAAATCATATAG
AA sequence Show only first row Show all	>Lus10006177 pacid=23148543 polypeptide=Lus10006177 locus=Lus10006177.g ID=Lus10006177.BGIv1.0 annot-version=v1.0 MDRLQVNILNPPVKEGFFKALDVHHHQLTSSNNLDIVVNNFRYHSSNGNDENGKGYLQAADLEDWDAAADDGHSPEDDPDSILFWESQESLLQEVLERHS SSSLKLRQEVGRIIGLAKHTDFCSCLNPDTQGCTNCLRHKVVDMLSQKRFDATICTSQWKNTREFPGGKHEYIKLIASTSTKKKKIPYLVELELKDQFEI AKPCEQYRRMVSQLPEYYIGKADCLNAIVRILCEAAKRSMKEQKIHMGPWRKRSFMQMKWSISSPKPEDSPLAGRKLPLPMPDLESSPVAAVEII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	0	1
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	1.0	0.9765
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	4.0	0.9342
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	4.2	0.8783
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	4.9	0.9256
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	5.5	0.9168
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	5.7	0.9211
					Lus10017606 [exp]	7.7	0.8970
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10030103 [exp]	8.1	0.8994
					Lus10017075 [exp]	8.5	0.9055
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10014934 [exp]	9.9	0.9098

Compare expression of checked genes

Lus10006177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.