Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 369 / 1e-127 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06080 345 / 6e-119 ADS1 delta 9 desaturase 1 (.1) AT2G31360 336 / 2e-115 ADS2 16:0delta9 desaturase 2 (.1) AT3G15870 335 / 3e-114 Fatty acid desaturase family protein (.1) AT1G06100 321 / 1e-109 Fatty acid desaturase family protein (.1) AT1G06120 313 / 1e-106 Fatty acid desaturase family protein (.1) AT1G06090 311 / 6e-106 Fatty acid desaturase family protein (.1) AT1G06350 311 / 7e-106 Fatty acid desaturase family protein (.1) AT1G06360 311 / 8e-106 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041043 [exp] 625 / 0 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 590 / 0 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 466 / 1e-166 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 462 / 6e-165 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 379 / 5e-132 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 374 / 1e-130 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10011488 [exp] 358 / 5e-123 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10023128 [exp] 343 / 6e-117 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 318 / 2e-108 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151800 [exp] 367 / 1e-126 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151700 [exp] 366 / 3e-126 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 365 / 8e-126 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10006180 pacid=23148572 polypeptide=Lus10006180 locus=Lus10006180.g ID=Lus10006180.BGIv1.0 annot-version=v1.0 ATGGCAGTCGGAGAAGCAATGGGAGAGACTCTAAAGGTGAACAATGGCAACGGCGGAATGGTTGCCAACAACTTGTCGCCACCACTCGATGTATCATTAG CCACCGCGACAAATAATAAGGAGGCAGTTGTAGGAACAACGACGACGAAGAAGAAGAAGAAGAAACTGAACGCGTACGACAGAATCGCGGTAGTGGGGAT CGTAGGGACCCACTTGCTGGCATTGTTTGCGCCGTTTTGCTTCAGCTGGGATGCGTTGTGGCTTGCGGTTTGTCTCTACCATGTAATGGGACTCTTGGGC ATTTGCTTCTCGTATCACAGAAATCTAGCCCACCACAGCTTCAAGGTCCCCAAATGGCTCGAGTATTTCTGCGCTTACTGCGGCGCCCAAGCTCTCCAGG GCGATCCAATGACTTGGGTGAGCAATCACAGATTCCATCACCAATATGTAGATACAGAGAGAGACCCACATAGCCCAATTGCTGGGTTTTGGCATAGTCA TATCAGCTGGATTTTCGATTCAGCTTCCATTCAAGAGAAGTGTGGGAAAAGAGACAATGTTGGAGACCTGAAAAGCCAAGCATTCTACAGGTGGCTTCGG AGGAGCTACGTGTATCACGTAATGGGTTTCGCAGCTCTTCTCTACACCATTGGTGGATTTCCCTATTTGGTCTGGGGAATTGGGGTGAGGACAGTATGTC TTCATCACTCGACATTCCTTGTTAACTCAGCTGCTCATGTATGGGGATCTCAGCCTTGGAAAACCAATGATCTCTCAAGAAACAATTGGTGGGTGGCAAT ATTGACATTTGGAGAAGGTTGGCACAACAATCACCATGCATTCAAATATTCGGCGAGGCAAGGGCTAGAATGGTGGCAAATAGATGTGACCTGGTATGTG CTCAACTTCCTTCAAATCTTGGGGTTGGCCTATGACGTCAAGGTCCCAAGTCAGTCCCAAATGCACAAATTACAGGCTTTGAAGACCGAGTAA
AA sequence Show only first row Show all	>Lus10006180 pacid=23148572 polypeptide=Lus10006180 locus=Lus10006180.g ID=Lus10006180.BGIv1.0 annot-version=v1.0 MAVGEAMGETLKVNNGNGGMVANNLSPPLDVSLATATNNKEAVVGTTTTKKKKKKLNAYDRIAVVGIVGTHLLALFAPFCFSWDALWLAVCLYHVMGLLG ICFSYHRNLAHHSFKVPKWLEYFCAYCGAQALQGDPMTWVSNHRFHHQYVDTERDPHSPIAGFWHSHISWIFDSASIQEKCGKRDNVGDLKSQAFYRWLR RSYVYHVMGFAALLYTIGGFPYLVWGIGVRTVCLHHSTFLVNSAAHVWGSQPWKTNDLSRNNWWVAILTFGEGWHNNHHAFKYSARQGLEWWQIDVTWYV LNFLQILGLAYDVKVPSQSQMHKLQALKTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10006180 [exp]	0	1
AT2G40435			unknown protein		Lus10009089 [exp]	10.5	0.7141
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	12.0	0.7507
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	21.4	0.7469
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	29.2	0.6703
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10015850 [exp]	29.5	0.7351
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	33.1	0.6493
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10029274 [exp]	37.8	0.7168

Compare expression of checked genes

Lus10006180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.