Plant FIBer expression Database

Lus10006181 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43170 645 / 0 RPL3A, ARP1, EMB2207 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
AT1G61580 645 / 0 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035786
[exp]
732 / 0 AT1G61580 683 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Lus10041041
[exp]
679 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
Lus10037360
[exp]
632 / 0 AT1G61580 612 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G194500
[exp]
666 / 0 AT1G43170 686 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Potri.002G066200
[exp]
665 / 0 AT1G43170 701 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Potri.003G008300
[exp]
615 / 0 AT1G61580 626 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF00297 Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence
>Lus10006181 pacid=23148557 polypeptide=Lus10006181 locus=Lus10006181.g ID=Lus10006181.BGIv1.0 annot-version=v1.0
ATGTCTCACCGTAAGTTTGAGCACCCTAGACACGGTTCTTTGGGGTTTCTCCCTAGGAAGAGAGCTGCCCGCCACAGAGGAAGAGTGAAGGCATTTCCCA
AGGATGATCCATCTAAGGAACCAAGACTTACTGCTTTCCTGGGTTATAAGGCTGGAATGACCCACATTGTTAGGGAGGTTGAGAAGCCTGGGTCGAAGCT
ACACAAGAAAGAGACATGTGAAGCTGTTACAATCATTGAGACTCCACCTTTGGTGGTTGTTGGAGTTGTTGGTTATGTTAAAACACCCAACGGCCTCCGC
TCGTTGAGCACTGTATGGGCTCAGCATTTGAGCGAGGATGTCAAGAGGAGGTTCTATAAACACTGGGCCAAGTCAAAGAAGAAGGCTTTCACCAAGTACG
CCAAGAAGTTTGAGACTGATGAGGGTAAAAAGGACATCAATGCCCGGTTGGAGAAGCTGAAGAAGTATGCAACTTGCATCCGTGTCATCGCCCACACCCA
GATTAGGAAGATGAAGGGGCTGAAGCAGAAGAAGGCTCACGTGATGGAGATTCAGGTCAACGGTGGTGATATTGCAAAGAAGGTTGACTTTGCCTACAGC
TTCTTTGAGAAGCAGATTCCCATTGATTCTGTGTTCCAGAAGGATGAGATGATCGACATCATTGGAGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTCA
CTCGTTGGGGTGTTACCCGACTTCCCCGAAAGACCCATCGTGGTCTTCGCAAGGTTGCTTGTATTGGGGCATGGCATCCTGCTAGGGTTTCCTACACAGT
TGCTAGGGCTGGCCAGAACGGTTACCATCACCGCACTGAAATGAACAAAAAAATCTACAAGCTTGGGAAGTCTGGACAAGATTCTCACTCTGCAATGACT
GAATATGACAGGACTGAGAAGGATATAACTCCTATTGGCGGGTTCCCTCATTATGGTGTGGTGAAGGAAGATTACATAATGATAAAGGGTTGCTGTGTTG
GTCCCAAGAAGCGTGTGGTGACCTTGAGGCAGTCACTGTTGAAGCAGACATCACGAACTGCTCTGGAACAGGTGAATCTCAAGTTCATCGACACTTCATC
CAAGTTTGGGCATGGCAGATTCCAGACTACTGTGGAGAAGCTCAAGCACTATGGTCGTGTCAAGGCTTAG
AA sequence
>Lus10006181 pacid=23148557 polypeptide=Lus10006181 locus=Lus10006181.g ID=Lus10006181.BGIv1.0 annot-version=v1.0
MSHRKFEHPRHGSLGFLPRKRAARHRGRVKAFPKDDPSKEPRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPNGLR
SLSTVWAQHLSEDVKRRFYKHWAKSKKKAFTKYAKKFETDEGKKDINARLEKLKKYATCIRVIAHTQIRKMKGLKQKKAHVMEIQVNGGDIAKKVDFAYS
FFEKQIPIDSVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKLGKSGQDSHSAMT
EYDRTEKDITPIGGFPHYGVVKEDYIMIKGCCVGPKKRVVTLRQSLLKQTSRTALEQVNLKFIDTSSKFGHGRFQTTVEKLKHYGRVKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G43170 RPL3A, ARP1, EM... embryo defective 2207, ribosom... Lus10006181
[exp]
0 1
AT1G04480 Ribosomal protein L14p/L23e fa... Lus10024943
[exp]
2.4 0.8688
AT5G08510 Pentatricopeptide repeat (PPR)... Lus10005987
[exp]
4.2 0.8470
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Lus10020794
[exp]
5.3 0.8805
AT1G50270 Pentatricopeptide repeat (PPR)... Lus10023251
[exp]
6.3 0.8163
AT1G70600 Ribosomal protein L18e/L15 sup... Lus10024161
[exp]
7.1 0.8545
AT2G20390 unknown protein Lus10022869
[exp]
14.1 0.7994
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Lus10032381
[exp]
14.5 0.8239
AT2G42740 RPL16A ribosomal protein large subuni... Lus10029824
[exp]
14.8 0.8559
AT4G27460 Cystathionine beta-synthase (C... Lus10025651
[exp]
15.2 0.7314
AT5G06550 unknown protein Lus10016202
[exp]
15.3 0.8277

Lus10006181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.