Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14320 132 / 1e-38 EMB3137 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) AT1G77750 131 / 2e-38 Ribosomal protein S13/S18 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037359 [exp] 226 / 3e-75 AT1G77750 141 / 3e-43 Ribosomal protein S13/S18 family (.1) Lus10035785 [exp] 152 / 3e-47 AT1G77750 102 / 7e-29 Ribosomal protein S13/S18 family (.1) Lus10025642 [exp] 134 / 2e-39 AT5G14320 222 / 4e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Lus10018192 [exp] 134 / 2e-39 AT5G14320 222 / 3e-75 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G088400 [exp] 173 / 4e-54 AT1G77750 175 / 4e-56 Ribosomal protein S13/S18 family (.1) Potri.002G088300 [exp] 137 / 1e-40 AT5G14320 229 / 5e-78 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2) Potri.005G172600 [exp] 136 / 4e-40 AT5G14320 227 / 5e-77 EMBRYO DEFECTIVE 3137, Ribosomal protein S13/S18 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0303 [flax] [poplar] H2TH PF00416 [flax] [poplar] Ribosomal_S13 Ribosomal protein S13/S18
Representative CDS sequence Show only first row Show all	>Lus10006182 pacid=23148532 polypeptide=Lus10006182 locus=Lus10006182.g ID=Lus10006182.BGIv1.0 annot-version=v1.0 ATGCTTGGATTGGGAAGGTCTGTTTCCAATGTCAGCCAACGCCTTCTTCAGAATGTAGCAGTAAATAGTATTTCTGTTCAGAGAGCTCTATTACTCGTAG CTGGTACATTTGTAATCAATTTCATGCAGCTTTTTTCGTATCGTTTCCGTTTTGTTTCAGAGATCTATGAACCGTTTTCTATAATTAGTAGTATGGTCTG GTTGCTCGGTGTTAGAATTATGACTAAAACAACAGAGAGAGTGAATATAGGCGGCTGCGTTTTCCTGAGACTAGCTGCTGTTATATGTATAATATCGACA TTGTTCAGCTATTTGATCGCTCTGTATTGGGATTGCTTTGTTCAGTTACGTTGTCAACAAGTGCAATGCCCTCGTATTGGCAACGCGGAGATCCCAAATC ACAAGAGGCTGGAGACTTCTCTTCAGTATATCCATGGAATTGGCCGCAGCAGGGCTCATCAGATGCTAGTCGACTTGAGTATACAAAATAAGCTTACCAA GGACTTGACTGGTGTGGAACTCAATTCCCTGAAGGAGGAGGTCTCTAGGTACTTAACGGGAGGTGATATAAAACGATGCGTTAGTGCTGATGTGCAAAAA TTGATCGATAGTGGATGCTACCGAGGCATCGGGCATATTGATATGTTGCCTTGTAGGGGACAGCGGACCAAGACCAATGCGAGGACCAGGAAAGGTGAGC TCTTTGTTCTGAACTCACAAGTCAGAACACGAAACATTTAA
AA sequence Show only first row Show all	>Lus10006182 pacid=23148532 polypeptide=Lus10006182 locus=Lus10006182.g ID=Lus10006182.BGIv1.0 annot-version=v1.0 MLGLGRSVSNVSQRLLQNVAVNSISVQRALLLVAGTFVINFMQLFSYRFRFVSEIYEPFSIISSMVWLLGVRIMTKTTERVNIGGCVFLRLAAVICIIST LFSYLIALYWDCFVQLRCQQVQCPRIGNAEIPNHKRLETSLQYIHGIGRSRAHQMLVDLSIQNKLTKDLTGVELNSLKEEVSRYLTGGDIKRCVSADVQK LIDSGCYRGIGHIDMLPCRGQRTKTNARTRKGELFVLNSQVRTRNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10006182 [exp]	0	1
AT1G71760			unknown protein		Lus10004010 [exp]	9.9	0.8038
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	12.7	0.8060
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	27.6	0.7874
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	37.1	0.7730
AT1G10180			unknown protein		Lus10022896 [exp]	47.4	0.7482
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	84.3	0.7273
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	102.5	0.7143
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	122.8	0.7036
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10034628 [exp]	128.5	0.7246
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	133.9	0.7109

Compare expression of checked genes

Lus10006182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.