Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10120 200 / 6e-59 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G04920 129 / 4e-34 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 116 / 9e-30 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 107 / 2e-26 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041041 [exp] 347 / 2e-110 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10016657 [exp] 130 / 1e-34 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10022570 [exp] 113 / 1e-28 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10008056 [exp] 106 / 3e-26 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10038119 [exp] 105 / 1e-25 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095500 [exp] 238 / 1e-72 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.017G057800 [exp] 154 / 7e-43 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.001G317600 [exp] 148 / 9e-41 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.018G025100 [exp] 111 / 7e-28 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 110 / 2e-27 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 103 / 3e-25 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 103 / 4e-25 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Lus10006183 pacid=23148535 polypeptide=Lus10006183 locus=Lus10006183.g ID=Lus10006183.BGIv1.0 annot-version=v1.0 ATGCTATTCGTGATAGCCGCTGATTGCTACGATTCTAACGGAAAACCCACGGGTTATATGCAAGACATCATCAAGAACACGCTCAAAGCTGCAGGCTTGT TAATTCAAGGGCCGGGCAAGGTTGGTCTTGTATTTTTGACCGACTCTAGTTTAGCAGAGACAATGGAAATGTTAAGATTATGCTCAGTGAATATAGAAGA CTTTGATGCCATAATATGCAACAGTGGAGGTGAGATGCACTGTCCATGGAGGGACATGGTGGCTGACTCGGACTATGAAGCACATGTGGACTACAGGTGG CCTAGTGATAATATTACGCCAATGGCGATGAAACTAGCTAAGGTTGTTGATGATGACGAGGCTAATGATGACGTCATTGTCGAACTCGATGAAGTAGAAG GCGGTTCCAGATGTTATTCTTACAGCATCAAACCAAGAGCCAGAATTCAAAATGTTGACAACCTACAACAAAGGCTCCGAATGAGAGGTTTCAGATGCAA TCTTGTCTACACCCAAGAAGCTACAAGGCTAAATGTAGTTCCGTTATTCGCATCAAGAGTTCAAACTCTGAGTTCGTGGGGGATCGATCTTTCGAATGTA GTGATTATTATGGGGGGAACGAGGCGATATGGACTACGAACAACTACTGGGTGGCCTTCACAAGACCCTTATTATAAGAGGCTCAGTCGAGTATGA
AA sequence Show only first row Show all	>Lus10006183 pacid=23148535 polypeptide=Lus10006183 locus=Lus10006183.g ID=Lus10006183.BGIv1.0 annot-version=v1.0 MLFVIAADCYDSNGKPTGYMQDIIKNTLKAAGLLIQGPGKVGLVFLTDSSLAETMEMLRLCSVNIEDFDAIICNSGGEMHCPWRDMVADSDYEAHVDYRW PSDNITPMAMKLAKVVDDDEANDDVIVELDEVEGGSRCYSYSIKPRARIQNVDNLQQRLRMRGFRCNLVYTQEATRLNVVPLFASRVQTLSSWGIDLSNV VIIMGGTRRYGLRTTTGWPSQDPYYKRLSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	0	1
AT1G11920			Pectin lyase-like superfamily ...		Lus10011257 [exp]	1.0	0.8513
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	6.9	0.7823
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	6.9	0.7327
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	7.3	0.8049
AT4G35150			O-methyltransferase family pro...		Lus10033653 [exp]	8.1	0.7321
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	15.5	0.7294
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	15.8	0.8008
AT3G12690		AGC1.5	AGC kinase 1.5 (.1.2.3)		Lus10001757 [exp]	16.3	0.7462
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	18.0	0.7178
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	18.3	0.7684

Compare expression of checked genes

Lus10006183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.