Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10120 208 / 4e-63 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G04920 170 / 1e-49 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 159 / 1e-45 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 150 / 1e-42 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G49190 61 / 3e-11 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT5G20830 61 / 3e-11 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 58 / 2e-10 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT1G73370 57 / 6e-10 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT4G02280 53 / 1e-08 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G37180 51 / 6e-08 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041041 [exp] 284 / 3e-89 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10022570 [exp] 172 / 6e-52 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10016657 [exp] 172 / 3e-50 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10008056 [exp] 160 / 3e-46 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10038119 [exp] 160 / 4e-46 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10012454 [exp] 61 / 2e-11 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10020506 [exp] 61 / 2e-11 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10008206 [exp] 57 / 2e-10 AT4G02280 323 / 1e-106 sucrose synthase 3 (.1) Lus10010308 [exp] 57 / 6e-10 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095500 [exp] 218 / 1e-66 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.001G317600 [exp] 184 / 2e-54 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.017G057800 [exp] 178 / 2e-52 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.T124307 [exp] 164 / 2e-47 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 164 / 2e-47 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 159 / 1e-45 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 155 / 3e-44 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G063500 [exp] 61 / 1e-11 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.004G081300 [exp] 60 / 4e-11 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.006G136700 [exp] 60 / 5e-11 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10006184 pacid=23148562 polypeptide=Lus10006184 locus=Lus10006184.g ID=Lus10006184.BGIv1.0 annot-version=v1.0 ATGATTCGGTTATTGAATGGTGTTTTCGTCAATCCAGCTCTAGTTGAACCATTTGGTCTCACACTCATCGAGGTAGCTGCATATGGTTTACCGATGGTAG CTACTGAAAATGGTGGACCGGTGGATATTCTGAAGGCTCTTAACAACGACATCCTAGTTGATCCTCATGATCATAAAGCTATAACAGACACACTGCTAAA GCTTCTAGTGGATAAAAACAGATGGAAATGTCGAAAAAACGGTCTGAAAAACATCCACCATTTTTCATGGCCGGAGCATTGTCGTAATTATCTTAGTCAC GTAGAGCACTGCAGGAACAACCATCACCTAAAGACCCATCTTGAGATGCCATGCATGCCTCAAGAACCATTGAGTGAGTCTCTAAAAGAAGCTGAACACC AGTCTTTGAGATTCTCCATAGAGGGAGATTTTTTCAGTTATAGCGGTAGTGAGCTCGATGCATAG
AA sequence Show only first row Show all	>Lus10006184 pacid=23148562 polypeptide=Lus10006184 locus=Lus10006184.g ID=Lus10006184.BGIv1.0 annot-version=v1.0 MIRLLNGVFVNPALVEPFGLTLIEVAAYGLPMVATENGGPVDILKALNNDILVDPHDHKAITDTLLKLLVDKNRWKCRKNGLKNIHHFSWPEHCRNYLSH VEHCRNNHHLKTHLEMPCMPQEPLSESLKEAEHQSLRFSIEGDFFSYSGSELDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006184 [exp]	0	1
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	1.7	0.8029
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	4.7	0.7738
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028896 [exp]	5.2	0.7667
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	14.1	0.6642
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10019993 [exp]	14.7	0.6905
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	15.0	0.7069
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10004315 [exp]	19.0	0.6805
					Lus10012084 [exp]	20.5	0.6602
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	20.8	0.6875
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	22.4	0.7220

Compare expression of checked genes

Lus10006184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.