Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10120 190 / 1e-55 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G04920 165 / 7e-47 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G11110 150 / 7e-42 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20280 141 / 1e-38 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G49190 52 / 1e-07 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT4G02280 47 / 3e-06 ATSUS3, SUS3 sucrose synthase 3 (.1) AT1G73370 47 / 6e-06 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT3G43190 44 / 4e-05 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 44 / 6e-05 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT5G37180 42 / 0.0003 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041041 [exp] 235 / 4e-71 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10016657 [exp] 159 / 1e-44 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10008056 [exp] 152 / 2e-42 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10038119 [exp] 152 / 2e-42 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10022570 [exp] 112 / 1e-28 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10017984 [exp] 49 / 9e-07 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10012454 [exp] 47 / 3e-06 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10020506 [exp] 47 / 4e-06 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10020791 [exp] 47 / 6e-06 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095500 [exp] 194 / 3e-57 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.001G317600 [exp] 160 / 3e-45 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.017G057800 [exp] 160 / 3e-45 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.006G064300 [exp] 159 / 1e-44 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 158 / 1e-44 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 157 / 4e-44 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 157 / 4e-44 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.002G202300 [exp] 47 / 5e-06 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.017G139100 [exp] 45 / 2e-05 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.015G029100 [exp] 45 / 2e-05 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006185 pacid=23148552 polypeptide=Lus10006185 locus=Lus10006185.g ID=Lus10006185.BGIv1.0 annot-version=v1.0 ATGTCAAGCTGGAGAGGAAACTTCGAGTCAGAAGATGATATGAAGTCAGTTGCATGGGTCGATACATACCGAGGATGGTGGTATGTTATCCCCCCGGGAA TAGACTTCAACTATGTTACAACTCGAGATTCATCAGAAGATGATATGAAATCGTTGATCCGTCTAGATAAAACTCCAAAAAAGGTGCAGATTCCTCTGAT ATGGTCCGAGCCAACTATACTGGCATTATCCCGTCCAGACCCGAAGAAGCATGTCACCACCTTGATCAAGGCCTTTGGGGAAAGCCAATCCCTTAGAGAA CTAGCAAACTTGATACTGATACTTGGCAATAGAGATGACATCAAGGATATGTCCAATACCCCTTATGTTGTACTTACCACTGTACTTAAGCTCATTGACA AGTATGATTTATATGGTCAAGTAGCTTACCCCAAGCACCACAAACAATCTCAAGTTCCCGATATCTATCGCCTTGCGCTAAGACAAAGGTGCCCTAACAA CTCTATGTTAATGAATAATATAGAAAGCAATCTGAAATCTTTCTCAACAATTCTGAATTATTTGGATGCAATGGTTCCTGAAACACTGGAGGTTCGTAAG TTCACTCAAACATCAGATTGGCTTGTTGGATTCTCTGCTCCATAG
AA sequence Show only first row Show all	>Lus10006185 pacid=23148552 polypeptide=Lus10006185 locus=Lus10006185.g ID=Lus10006185.BGIv1.0 annot-version=v1.0 MSSWRGNFESEDDMKSVAWVDTYRGWWYVIPPGIDFNYVTTRDSSEDDMKSLIRLDKTPKKVQIPLIWSEPTILALSRPDPKKHVTTLIKAFGESQSLRE LANLILILGNRDDIKDMSNTPYVVLTTVLKLIDKYDLYGQVAYPKHHKQSQVPDIYRLALRQRCPNNSMLMNNIESNLKSFSTILNYLDAMVPETLEVRK FTQTSDWLVGFSAP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006185 [exp]	0	1
AT1G78690			Phospholipid/glycerol acyltran...		Lus10003105 [exp]	12.6	0.5346
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10042888 [exp]	23.0	0.5116
					Lus10004635 [exp]	27.2	0.5456
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	33.5	0.4824
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	34.4	0.5335
					Lus10043436 [exp]	56.9	0.4836
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	79.1	0.4783
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	81.8	0.4884
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10027109 [exp]	113.8	0.4442
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	115.0	0.4644

Compare expression of checked genes

Lus10006185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.