Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10120 300 / 7e-95 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G04920 259 / 1e-79 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 252 / 3e-77 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 240 / 6e-73 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20830 45 / 2e-05 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT5G37180 44 / 6e-05 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT3G43190 43 / 0.0002 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G49190 42 / 0.0002 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041041 [exp] 387 / 8e-125 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10008056 [exp] 261 / 2e-80 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10016657 [exp] 259 / 2e-79 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10038119 [exp] 227 / 7e-68 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095500 [exp] 321 / 9e-103 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.001G317600 [exp] 262 / 7e-81 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.017G057800 [exp] 256 / 1e-78 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.018G124677 [exp] 247 / 2e-75 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 246 / 4e-75 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 244 / 4e-74 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 243 / 5e-74 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G063500 [exp] 47 / 1e-05 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 42 / 0.0003 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.002G202300 [exp] 41 / 0.0007 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006186 pacid=23148558 polypeptide=Lus10006186 locus=Lus10006186.g ID=Lus10006186.BGIv1.0 annot-version=v1.0 ATGACGACCTCCTCAGAGCAACACGATGCTGATCATCCTCACACTACTACTACCTCCTCCACCACTGTCGCCACATATGAGTTGTTTAGCCCGACAACCT ACTTTGTTGAAGAGGTTATTAATAGCTTTGATGAGTCCGACCTCCACATGACTTGGGAACATGGAGATGCCATAATTCCTCCTGAATCTACAAAAGAAGC TGATTCTTCTGCCTCCCAGTCCCAGATATGGACGGCTGAAGAAAAGCCTAGGCACCTTTCCATTGTTTTAATCAGTTTGCACGGTATGGTGCGTGGAGAA AACATGGAACTTGGAAGAGATTCTGATACTGGTGGCCAAGTCAAATACGCAGTCGAGCTAGCTCGAGCTCTGGCCAATACAAGTGGAATCTACCGTGTCG ATCTCTTAACAAGACAGATTACGTCACCTGAAGTAGACTCTAGCTATGGCGAGCCGATTGAGATGCTGTCATATCCACAAGATGGCACCGGCAGTTGTGG AGCCTACATAATCTCTATATTCCACAAGTATATTCCAAAAGAATCACTTTGGCCTTATGTACCTGAATTCGTCGTCGGTGCACTGAACCACATAGTCAAC ATGGCAAGAGTCCTGGGAGAACAAGTCAATGGTGGGGTGGGGAAGCCAACTTGGCCATATGTCATTCATGGCCACTATGCTGATGCAGGAGAAGTCGTGG CTCATCTATCCAGAGCCTTGGAGGTGCCAATGGTGCTAACTGGACACTCACCCGGGAGAAACAAGTTTGAGCAGCTACTGAAGTAG
AA sequence Show only first row Show all	>Lus10006186 pacid=23148558 polypeptide=Lus10006186 locus=Lus10006186.g ID=Lus10006186.BGIv1.0 annot-version=v1.0 MTTSSEQHDADHPHTTTTSSTTVATYELFSPTTYFVEEVINSFDESDLHMTWEHGDAIIPPESTKEADSSASQSQIWTAEEKPRHLSIVLISLHGMVRGE NMELGRDSDTGGQVKYAVELARALANTSGIYRVDLLTRQITSPEVDSSYGEPIEMLSYPQDGTGSCGAYIISIFHKYIPKESLWPYVPEFVVGALNHIVN MARVLGEQVNGGVGKPTWPYVIHGHYADAGEVVAHLSRALEVPMVLTGHSPGRNKFEQLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006186 [exp]	0	1
AT3G44716			unknown protein		Lus10009406 [exp]	1.7	0.8306
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10010666 [exp]	6.3	0.7717
AT2G20362			unknown protein		Lus10024963 [exp]	10.2	0.8514
AT1G31500			DNAse I-like superfamily prote...		Lus10026203 [exp]	12.4	0.8066
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000547 [exp]	13.8	0.8172
AT1G54400			HSP20-like chaperones superfam...		Lus10013655 [exp]	14.7	0.8423
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	24.2	0.8077
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	24.2	0.8085
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	24.6	0.8187
AT3G24110			Calcium-binding EF-hand family...		Lus10016675 [exp]	25.0	0.7854

Compare expression of checked genes

Lus10006186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.