Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25340 133 / 3e-38 Ubiquitin-like superfamily protein (.1) AT4G32270 129 / 4e-36 Ubiquitin-like superfamily protein (.1.2) AT1G80060 108 / 3e-28 Ubiquitin-like superfamily protein (.1) AT3G07860 70 / 1e-14 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041040 [exp] 529 / 0 AT5G25340 139 / 2e-40 Ubiquitin-like superfamily protein (.1) Lus10012567 [exp] 87 / 2e-20 AT3G07860 205 / 3e-68 Ubiquitin-like superfamily protein (.1) Lus10041524 [exp] 67 / 8e-13 AT3G07860 184 / 3e-59 Ubiquitin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255500 [exp] 190 / 3e-59 AT5G25340 164 / 9e-50 Ubiquitin-like superfamily protein (.1) Potri.002G015002 [exp] 80 / 3e-18 AT3G07860 178 / 1e-57 Ubiquitin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006187 pacid=23148542 polypeptide=Lus10006187 locus=Lus10006187.g ID=Lus10006187.BGIv1.0 annot-version=v1.0 ATGAGTCTCGTTGATACGAGGATTGACCTTGGCAGTCCCAGTGGTACTCCTACGGAGTTTCTTCACCGCCGATCGAATTCCCTGCCGTTCCTTTCCTTGT ATGGCTTCTCCGACAGCGGAAGCTTTTCCTACAGTAAGCTACCGGCGAGACCTATTACACTCTCGATTCTCAAGTTGGACGGCACTTGCTTCGATGTCGA AGTTAAGAATTCAGCGACGGTTACTGAATTAAAGCATGCGGTGGAGGCTGCCTTCAGTTACATGCCACAGAAGGGGCCTGGCAAGATCTCATGGCAGCAT GTTTGGGGACATTTCTGCTTGAGCTTCCATGGCCAAAAGCTGCTCTTTGAAGCCGACTCCATCAGCAACTTCGGCATTAGGGAGGGTGATCAGCTCCAAT TTATCCGGCATGTCTCAACCGCCTTCACCTTCACAAAGAAGGGATCCATTAAAAGGATGTTGTCTACAGAAACAAACAAAATAACCCTTTTACTTTCTCA ATCTGTTGTCCTAATGAATGACTTACCGGGGGTAGTCTTCAGTTCACTAACAGCACCAAGAAGAGATGCTTCAGAAATAGAGCTTAATGCTGATGATGAT GCCTGTTTCAGTGACATGGAGAATGGAATCTTTCGACACGACGACAGCGAACAGAGCAACTTGGGGATGATAGAACTCCAAGAAGGAATCGACCCGAGCT TAGCAAGTCCATGGTTCCCTTACTCGAGGCTGTCACCAAAGGAATCGAAAAGAAAATTCAAGGTATCTCCCTCGAGATACGGGTGCGGCTTCTTCAGTGG CTTTAAGAACATCGCTCAGTTTTGTGGTACTCGGTACTAA
AA sequence Show only first row Show all	>Lus10006187 pacid=23148542 polypeptide=Lus10006187 locus=Lus10006187.g ID=Lus10006187.BGIv1.0 annot-version=v1.0 MSLVDTRIDLGSPSGTPTEFLHRRSNSLPFLSLYGFSDSGSFSYSKLPARPITLSILKLDGTCFDVEVKNSATVTELKHAVEAAFSYMPQKGPGKISWQH VWGHFCLSFHGQKLLFEADSISNFGIREGDQLQFIRHVSTAFTFTKKGSIKRMLSTETNKITLLLSQSVVLMNDLPGVVFSSLTAPRRDASEIELNADDD ACFSDMENGIFRHDDSEQSNLGMIELQEGIDPSLASPWFPYSRLSPKESKRKFKVSPSRYGCGFFSGFKNIAQFCGTRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32270			Ubiquitin-like superfamily pro...		Lus10006187 [exp]	0	1
					Lus10017551 [exp]	16.4	0.7952
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10023094 [exp]	29.8	0.7845
AT1G73120			unknown protein		Lus10022961 [exp]	42.3	0.7770
AT2G03370			Glycosyltransferase family 61 ...		Lus10036806 [exp]	49.4	0.7697
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10027306 [exp]	53.9	0.7715
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	55.3	0.7685
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	58.9	0.7427
AT3G07640			unknown protein		Lus10036423 [exp]	61.7	0.6849
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	62.1	0.7486
					Lus10006375 [exp]	83.4	0.6907

Compare expression of checked genes

Lus10006187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.