Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32260 195 / 9e-63 PDE334 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041039 [exp] 302 / 6e-105 AT4G32260 220 / 8e-73 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026500 [exp] 199 / 2e-64 AT4G32260 218 / 9e-72 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1) Potri.006G255600 [exp] 194 / 2e-62 AT4G32260 214 / 3e-70 PIGMENT DEFECTIVE 334, ATPase, F0 complex, subunit B/B', bacterial/chloroplast (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [flax] [poplar] ATP_synthase PF00430 [flax] [poplar] ATP-synt_B ATP synthase B/B' CF(0)
Representative CDS sequence Show only first row Show all	>Lus10006188 pacid=23148547 polypeptide=Lus10006188 locus=Lus10006188.g ID=Lus10006188.BGIv1.0 annot-version=v1.0 ATGGCGAAGATGATAATGGCAACTTCCAAGCCCTTCATCTTCGCTCCATCTGCCTCCCTCCTCCCAACGACAACCACCGCCTCTTCCTCCAAGCCTAAAC TCCCCAACCTCTCCGTCCTCCTCCGCTCCAAAATCCCAAAGTCTCATCAAACCCTCTCCCTCAAATCCGCTTCTTCCCTCCTGGCCACCTCAATCTCCTT CGCTGCCTTCGCCCCTCCCTCTCTGGCCGCCGAGATCGAGAAGGCCGCTCTCTTCGACTTCGACCTCACCCTCCCAATCATGATCGTCCAGTTCCTGCTC CTCATGGTTGGCCTCGACAAGGTCTACTACTCCCCCCTCGGCAAGTTCATGGACGAGAGAGACGCCGCTATCAAGGAGAAGCTCAACAGCGTCAAGGACA CCTCCACGGAGGTGAAGCAGCTGGAGGAGCAGGCGGCAGCGATCATGAAGGCAGCGAGGGCCGAGATAGCCGCGGCGCTGAACAAGATGAAGAAGGAGAC GCAGGTGGAGGTTGAGGCCAAGATCAAGGAAGGGAGGATGAAGGTGGAGGTGGAGCTGCAGGAGGCTCTGGCCAACCTGGAGAAGCAGAAGGACGAGACT ATCCTCGCCCTTGATGCTCAGATTGGAGCTCTCAGTGACGACATTGTAAAGAAGGTCCTTCCTGGCTACGTCAAGTCATCATAA
AA sequence Show only first row Show all	>Lus10006188 pacid=23148547 polypeptide=Lus10006188 locus=Lus10006188.g ID=Lus10006188.BGIv1.0 annot-version=v1.0 MAKMIMATSKPFIFAPSASLLPTTTTASSSKPKLPNLSVLLRSKIPKSHQTLSLKSASSLLATSISFAAFAPPSLAAEIEKAALFDFDLTLPIMIVQFLL LMVGLDKVYYSPLGKFMDERDAAIKEKLNSVKDTSTEVKQLEEQAAAIMKAARAEIAAALNKMKKETQVEVEAKIKEGRMKVEVELQEALANLEKQKDET ILALDAQIGALSDDIVKKVLPGYVKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	0	1
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	1.4	0.9812
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	2.0	0.9783
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	2.4	0.9676
AT4G38225			unknown protein		Lus10013843 [exp]	2.6	0.9609
AT5G52420			unknown protein		Lus10027495 [exp]	3.5	0.9640
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	4.5	0.9630
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	4.7	0.9442
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	5.3	0.9414
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	5.7	0.9548
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	6.0	0.9610

Compare expression of checked genes

Lus10006188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.