Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32590 121 / 2e-35 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4) AT3G16250 70 / 3e-15 PnsB3, NDF4 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041038 [exp] 260 / 3e-90 AT4G32590 177 / 4e-57 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4) Lus10038292 [exp] 60 / 3e-11 AT3G16250 227 / 9e-76 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1) Lus10025809 [exp] 59 / 3e-11 AT3G16250 227 / 1e-75 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247300 [exp] 135 / 7e-41 AT4G32590 190 / 2e-62 2Fe-2S ferredoxin-like superfamily protein (.1.2.3.4) Potri.001G186800 [exp] 55 / 1e-09 AT3G16250 203 / 8e-67 Photosynthetic NDH subcomplex B 3, NDH-dependent cyclic electron flow 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10006189 pacid=23148533 polypeptide=Lus10006189 locus=Lus10006189.g ID=Lus10006189.BGIv1.0 annot-version=v1.0 ATGTCAGCCATTCATTTCCCCGGCAGCACCCCAATCTCTCATCTGCCCTCCGATTGCTTTTCCCGGCAACGCAACCCCTACCGGAACCAAGCTGTGAAGT ATTCTTTCCAAAGCAAAAGGAAGTTGTCGTCAGTCTCAGTAACCGCCGACCCATCGCAGATTGTTCCTGCTGAGAAGCCCGTAATTGCGCTCCACTTCAT CGGGCCAAAGACAGCAAGTGATGGGAAGTACCCGGTGGAGGAAGCAAGAGCTATAAGTGGAGACAAACTTCTCAGGAACATTATGCTGGATAATAAAATC GAGCTTTACGCTACCTATGGAAAAGTAATGAACTGTGGAGGTGGTGGAACGTGTGGAACCTGCATTGTTGAGATTGCTGAGGGAAATTATCTGCTGAATG AAAGGACCAATGCTGAATTCCGGTATCTTAAGAAGGTTGTGGTTCAGAGGCTCCCTCAGTGGAAGAAATGA
AA sequence Show only first row Show all	>Lus10006189 pacid=23148533 polypeptide=Lus10006189 locus=Lus10006189.g ID=Lus10006189.BGIv1.0 annot-version=v1.0 MSAIHFPGSTPISHLPSDCFSRQRNPYRNQAVKYSFQSKRKLSSVSVTADPSQIVPAEKPVIALHFIGPKTASDGKYPVEEARAISGDKLLRNIMLDNKI ELYATYGKVMNCGGGGTCGTCIVEIAEGNYLLNERTNAEFRYLKKVVVQRLPQWKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10006189 [exp]	0	1
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10041038 [exp]	1.0	0.9531
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	6.7	0.9129
AT3G25805			unknown protein		Lus10022435 [exp]	7.2	0.9207
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	8.7	0.9070
AT2G46735			unknown protein		Lus10030208 [exp]	9.2	0.8908
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	11.2	0.9054
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	11.5	0.9039
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10014015 [exp]	14.9	0.8653
AT3G25805			unknown protein		Lus10016741 [exp]	15.3	0.8945
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	15.9	0.8870

Compare expression of checked genes

Lus10006189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.