Plant FIBer expression Database

Lus10006190 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32190 364 / 1e-115 Myosin heavy chain-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041037
[exp]
960 / 0 AT4G32190 380 / 1e-122 Myosin heavy chain-related protein (.1)
Lus10001498
[exp]
71 / 2e-14 AT4G32190 72 / 1e-15 Myosin heavy chain-related protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G255800
[exp]
474 / 2e-158 AT4G32190 546 / 0.0 Myosin heavy chain-related protein (.1)
Potri.018G026300
[exp]
101 / 4e-23 AT4G32190 99 / 1e-22 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence
>Lus10006190 pacid=23148549 polypeptide=Lus10006190 locus=Lus10006190.g ID=Lus10006190.BGIv1.0 annot-version=v1.0
ATGGGTTCCTTTGCTGCTCTTCGCCTCAGTTCCCCCCCATTCTCTCAGTTGTTCTCATCAGAATCTAGCTTGAAAGGGAATAAGTTAACGACTATAGCAA
TCGGAAGAAGGAAGACTTTTTCGTTACGTATTGTCAAGGCGGTATTGGAAAGCAGGAATCCGGGCAACAATCGCCGTAATAGCGCGACTGTATCTGCAAG
AATACTTCTCGAGAGGCTGTTTGCACAGACGCAGAAGATCGAAGAACAGATGACAAAGCACTCTCAATTCCCCGAGGATATAAATCTGGAAATCCTGGAA
TCTGATCTGGTTGCTGTGTTGGAAGCTCTTAGAAATAAGGAAGAATACCTTCAAACCGCAGAAATGAAAGTTGACGCCGAGCGCTGCGAGCTCGACCGCG
CTAGAAAGGAATTAGAGCGACGGGAAGAGGAAATAGCTGCTGTTTATGCCAAGTATGAATGGCTGGAAACAGAGCTGAAGCAATCAAATCTCCATTTGGC
TTCTCAGGCCAAGCAGATTGAAGATTTGAGGTTCCAGCTCACCGAAAGAGACCGCGAGGTTGCTGCCGTGCGTTCTGCTTTGTCGTTGAAAGAAGATGAA
ATGGAGCAATTGCAAATGGAATTCGCTAATAAAAATGTGGAGTTTGCTAAGCTGGAAGCTGAATTTCGGAGCAAGGTTCAACTGCTTAATAGAGCCAACG
AGGTCATTAACAATCAAGAGATTGAGATTCAACAACTGAGAAATGTGGTTCAAGAGAAAGAAAAAGAACTGGAAACTTCGGCTGCTTTGAGAATAATTGA
ACAGCAAAAGGTGAATGCTTTGGAGGCGAATTTGAGGAAGCAGATAAAGGAGTGGTTGTTGGCACAGGAAGAGTTGAAGAAGTTATCTGATGAAGCGTCT
AATCAGTTGGTGGAAACCAATGAAACTTTAGAGGATTACAGAAGAGTTAAGCTGCTTCTTGCAGGTGTGAGATCTGAGCTTGTGGCTTCACAACAGTCTC
TGGCTTTCTCTAGGAAAGGGATGGAAGAGCAGGAACTAAGTTTAAGAAAGCAACTAGTAGATCTTGAAGAAGAGAGGATGAGCCTTGCATCTTACGTTTC
CAATTTGAGAGATGCCAGAAGACAAGTCGAGAGTGAGCAAGCAAAGCTCATGGTTGCTGAGGCACGAAACAAGGAGCTCGAACGAGAACTATTCTCGGAG
AAGGAGACAATTGAAGAGTTGAGAGAGGCGCTGAGGAACGATAAGTCTTCTCTGCGACGAGTGACATCGCAGATTTCGCTGGTGAAATCGGAACTGGAGA
AGAAGAAGGCGGATTTTAAAGAGTTGCAGAGTGTTCTTCGGAATAAGGATGCTGAACTGGTACAGGCTAAGCTTGATATTGGGCGGCTGAAATCGGAAAG
GGAATCTCTTTTGCTTGATATGGAGGACAAAGATTCACGGTTGGTGAATGAAATGGAGAAATTTAATGAAGTGAACCAGGAGGTTGCAGAACTAAGGATG
ATGATGAGCGGTAAAGAAGATCAACTTATGCAAGCTACTACTTTGCTGAAGGATAAAGAAAACCAGGTCCAGTTTATGCAGAGTGAACTGGATGATACCA
GATTGAAAGTAGCAGAAGCCGAAACGGCTGTGCAAGGATTAGTGGATCTTACAAACAAACTAGTATCATGCAGCAAAGAAGAAGATGAACGGGGAGGAAT
TCTCGAATCTCAGCATCAACGACCCTTAGATAGAAAGAATGAAGATTTCGTGTTGAGAAATAGGGAGCTAGAGAGTGAGCTCAAGCTGGTTCGGGAAAGC
TTAAGTAAAAAGGAAATGGAACTTGCAGCAGCACAGAGAGATGTCACCGAGATGCCAATCTTGCAGCAAGAAGGATGTAGCGGAGAGTCTCTAGAGGATG
TTAAAATGAGAGTGATTCGTCTTGCGGGTCTGGTAGAACACCTGGTTAAAGAGGCTGGTATTGCGGTACAGGCAGGATGA
AA sequence
>Lus10006190 pacid=23148549 polypeptide=Lus10006190 locus=Lus10006190.g ID=Lus10006190.BGIv1.0 annot-version=v1.0
MGSFAALRLSSPPFSQLFSSESSLKGNKLTTIAIGRRKTFSLRIVKAVLESRNPGNNRRNSATVSARILLERLFAQTQKIEEQMTKHSQFPEDINLEILE
SDLVAVLEALRNKEEYLQTAEMKVDAERCELDRARKELERREEEIAAVYAKYEWLETELKQSNLHLASQAKQIEDLRFQLTERDREVAAVRSALSLKEDE
MEQLQMEFANKNVEFAKLEAEFRSKVQLLNRANEVINNQEIEIQQLRNVVQEKEKELETSAALRIIEQQKVNALEANLRKQIKEWLLAQEELKKLSDEAS
NQLVETNETLEDYRRVKLLLAGVRSELVASQQSLAFSRKGMEEQELSLRKQLVDLEEERMSLASYVSNLRDARRQVESEQAKLMVAEARNKELERELFSE
KETIEELREALRNDKSSLRRVTSQISLVKSELEKKKADFKELQSVLRNKDAELVQAKLDIGRLKSERESLLLDMEDKDSRLVNEMEKFNEVNQEVAELRM
MMSGKEDQLMQATTLLKDKENQVQFMQSELDDTRLKVAEAETAVQGLVDLTNKLVSCSKEEDERGGILESQHQRPLDRKNEDFVLRNRELESELKLVRES
LSKKEMELAAAQRDVTEMPILQQEGCSGESLEDVKMRVIRLAGLVEHLVKEAGIAVQAG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32190 Myosin heavy chain-related pro... Lus10006190
[exp]
0 1
AT3G45300 IVDH, ATIVD, IV... isovaleryl-CoA-dehydrogenase (... Lus10036122
[exp]
1.4 0.9687
AT1G55510 BCDH BETA1, BCD... branched-chain alpha-keto acid... Lus10013401
[exp]
3.5 0.9478
AT1G03090 MCCA methylcrotonyl-CoA carboxylase... Lus10042623
[exp]
4.0 0.9499
AT1G60140 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 1... Lus10030853
[exp]
4.5 0.9443
AT5G10600 CYP81K2 "cytochrome P450, family 81, s... Lus10009909
[exp]
4.5 0.9407
AT2G06005 FIP1 FRIGIDA interacting protein 1 ... Lus10017167
[exp]
4.9 0.9401
AT5G11380 DXPS3 1-deoxy-D-xylulose 5-phosphate... Lus10013117
[exp]
4.9 0.9323
AT1G10600 AMSH2 associated molecule with the S... Lus10030875
[exp]
6.9 0.9357
AT4G32190 Myosin heavy chain-related pro... Lus10041037
[exp]
8.0 0.9314
AT2G30070 ATKUP1, ATKT1P,... POTASSIUM UPTAKE TRANSPORTER 1... Lus10032154
[exp]
8.5 0.9286

Lus10006190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.