Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11150 317 / 2e-109 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 315 / 1e-108 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT2G25340 311 / 2e-107 ATVAMP712 vesicle-associated membrane protein 712 (.1) AT5G22360 234 / 4e-77 ATVAMP714 vesicle-associated membrane protein 714 (.1) AT1G04760 133 / 1e-37 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT1G04750 132 / 3e-37 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 132 / 3e-37 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT2G32670 130 / 8e-36 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT3G54300 124 / 5e-34 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT4G15780 117 / 2e-31 ATVAMP724 vesicle-associated membrane protein 724 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041035 [exp] 368 / 6e-130 AT5G11150 343 / 9e-122 vesicle-associated membrane protein 713 (.1) Lus10001492 [exp] 335 / 3e-116 AT5G11150 367 / 1e-130 vesicle-associated membrane protein 713 (.1) Lus10043394 [exp] 240 / 3e-79 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10034189 [exp] 240 / 4e-79 AT5G22360 400 / 6e-144 vesicle-associated membrane protein 714 (.1) Lus10002926 [exp] 233 / 4e-69 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10040611 [exp] 134 / 8e-38 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 133 / 1e-37 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 133 / 1e-37 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 132 / 4e-37 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025800 [exp] 335 / 9e-117 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1) Potri.006G256200 [exp] 335 / 2e-116 AT4G32150 352 / 5e-125 vesicle-associated membrane protein 711 (.1) Potri.018G125900 [exp] 272 / 7e-92 AT4G32150 276 / 1e-94 vesicle-associated membrane protein 711 (.1) Potri.001G219200 [exp] 244 / 1e-80 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1) Potri.009G018900 [exp] 240 / 4e-79 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.012G119600 [exp] 137 / 4e-39 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 132 / 3e-37 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 131 / 1e-36 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 129 / 5e-36 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 127 / 2e-35 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10006192 pacid=23148545 polypeptide=Lus10006192 locus=Lus10006192.g ID=Lus10006192.BGIv1.0 annot-version=v1.0 ATGCCGATTCTTTATTCGCTCGTGGCGAGGGGATCTGTCGTCCTCGCGGAGTTCAGCGCCACGGCCACCAACGCCAGCGCAATCGCCAGGCAGATTCTGG GTAAGATTCCTGGAAATGACGATAGCCACGTCTCTTATTCTCAAGATCGCTTCATCTTCCACGTCAAGCGTACCGATGGCCTCACCGTTCTCTGTATGGC TGAGGAGACTGCCGGGAGAAGAATTCCATTTGCTTTTCTCGAAGACATTCATCAGAGATTCGTCAGGACATACGGCCGTGCTGTTCATTCAGCTCAAGCT TATGGTATGAATGATGAATTCTCCAGGGTTTTGAACCAACAAATGGATTACTACTCTAGTGATCCCAATGCTGATAGGATGAATAGACTGAAAGGTGAAA TGAATCAGGTGCGAAATGTCATGATTGAGAACATAGACAAAGTTCTTGAGAGAGGCGATCGCTTGGAGTTACTAGTGGATAAAACGAGTAACATGCAAGG GAACACCTTCCGTTTCAGAAAGCAGACTCGCCGGTTCAGAACCGCAGTATGGTGGAGAAATGTCAAGCTCACAATGGGAACTTATATATTAATCCAACCA AACCAGCATACAATTATAGTGAGGCACTACAGGTGCAGGAGAAAAAAGTTAGATCCAGCTATCCAGTCTGAGAGGAGTCTCCCATTGTTGAATTCTCTAG CAATCCAATTCGCACGGTCATTAGATTTCCGAGGAGTGAAACAAATTTCAATATCCTGGTTACAATCGATGAGGCTTCGCACAGAAGCAATAGTCGAAGC ACAATCCTACGGCCAGGGTTCGATACCTTTGATCAGTATACGTACCAACACTTGGCAATCTGAGAAGATTCTGGAAAAATCATCATGTCTATACCTTGTC GAGGGTCATTTTTTTCCATATGAATGA
AA sequence Show only first row Show all	>Lus10006192 pacid=23148545 polypeptide=Lus10006192 locus=Lus10006192.g ID=Lus10006192.BGIv1.0 annot-version=v1.0 MPILYSLVARGSVVLAEFSATATNASAIARQILGKIPGNDDSHVSYSQDRFIFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHSAQA YGMNDEFSRVLNQQMDYYSSDPNADRMNRLKGEMNQVRNVMIENIDKVLERGDRLELLVDKTSNMQGNTFRFRKQTRRFRTAVWWRNVKLTMGTYILIQP NQHTIIVRHYRCRRKKLDPAIQSERSLPLLNSLAIQFARSLDFRGVKQISISWLQSMRLRTEAIVEAQSYGQGSIPLISIRTNTWQSEKILEKSSCLYLV EGHFFPYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10006192 [exp]	0	1
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10005819 [exp]	1.0	0.8818
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	5.3	0.8215
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	12.0	0.8201
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	12.6	0.8213
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	15.1	0.7994
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	17.2	0.8074
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10025174 [exp]	26.2	0.7885
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	29.3	0.7897
AT5G15140			Galactose mutarotase-like supe...		Lus10015365 [exp]	40.6	0.8143
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	54.6	0.7372

Compare expression of checked genes

Lus10006192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.