Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11100 800 / 0 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 761 / 0 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 256 / 3e-78 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 219 / 3e-64 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 216 / 4e-63 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 207 / 7e-60 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 148 / 2e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 147 / 2e-37 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT2G21010 84 / 6e-18 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 70 / 3e-12 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041034 [exp] 849 / 0 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 764 / 0 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 653 / 0 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 334 / 8e-110 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 232 / 1e-69 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10027709 [exp] 226 / 2e-69 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036532 [exp] 231 / 7e-69 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 213 / 9e-62 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 209 / 2e-60 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G025000 [exp] 877 / 0 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 775 / 0 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 767 / 0 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 241 / 8e-73 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 239 / 3e-72 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 229 / 1e-67 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 225 / 3e-66 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 219 / 4e-64 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 211 / 3e-61 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 211 / 3e-61 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10006193 pacid=23148551 polypeptide=Lus10006193 locus=Lus10006193.g ID=Lus10006193.BGIv1.0 annot-version=v1.0 ATGTCTTTCTTTGTCGGTTTCTTCATCGGAGTCTCCATCGGGATTCTCCTCATACTCGGATTAGCTCGTAACGAGTCCCTCCGTTCAGCTCGCCGCTCCG ACCTGGCGAAGACAGTGGCTGCTTTTGCGAGGATGACGGTGCAGGACTCCCGGAAAATTCTACCGGCGGAGTTCTACCCATCCTGGGTCGTCTTCTCCAA TAGACAAAAGTTGAGTTTCTTACATCTTCCTTTAAATTGGCTTAATCACCTGCTAGACAAGATTTGGCCTTATGTTGATGCGGCAGCGTCAGAGTTGATA AGAAGCAATGTAGAGCCGATTCTAGAACAGTACAGACCAGCTATTCTATCATCTCTCAAATTCTCCAAGCTCACTCTTGGCACTGTTGCTCCTCAGTTCA CTGGAATTACCATAATTGAAGAGGAAAGTGACTCTAAAGGAGTAACAATGGAGTTGGAGATGCAGTGGGATGGAAATCCAAATATTGTGCTTGATATCAA CACCAGAGTTGGTGTTGCCCTTCCCATACAGGTAAAAGACATTGGATTCACTGGGGTTTTCAGGCTAATCTTCAAGCCACTTGTTCCTGAGTTCCCTGGA TTTGCTGCTATTTCCTATTCCTTGAGGGAAAAGAAAAAACTGGATTTTAGACTTAAAGTCATTGGAGGGGAATTATCATCAATACCAGGGTTATCTGATG CTATTGAAGAAACTATAAAGGACGCTGTTGAAGATTCTATTACATGGCCAGTTAGGAAAATCATACCAATTTTGCCTGGCGACTACGAGGATTTGGAGTT GAAGCCTGAAGGAACATTGGATGTGAAACTTGTGCAAGCCAAAGAGCTATCAAACAAAGACGTGATAGGGAAATCAGATCCATTTGCAGTCTTGTTTGTG CGTCCACTGCGTGACAGAACCAAAACCAGCAAAGTTATTAACAACCAATTGAATCCCATTTGGAATGAGCACTTTGAGTTCATTGTGGAGGACGCATCCA CACAGCATTTGACGATCAGAGTGTTTGATGACGAAGGGATTTCAGCTTCTGAACTCATTGGCCAGGCTCAGGTGTCACTGAAGGATCTTGAGCATGGGAA AGTTAAGGACGTGTGGTTGAAACTAGTCAAAGATTTGGAGGTTCAGAGAGACAATAAGTACAGAGGCGAGGTGCATTTGGAGCTGCTATATGTTCCGTAT GGCATGGACAGCAGCTTGAAGAACCCATTCAATCCGGATTTCCAATTGACAACACTGGAGAAGACCATCAAGGGTGGAAATGAAGCATGTGAGGAGCCTA ATTTAACCTCAGCAGCATCTAGGAAGAACGTGATCATCCGAGGAGTGCTTTCAGTAAATGTGGTGGCTGCCGAGGACTTGCCAGCAGTAGATTTAATGGG GAAAGCGGATCCGTACGTTGTCCTCATAATGAAGAAATCTGACGCAAAATCAAAAACCAGGGTGGTACAAGAGAGCCTGAACCCAGTATGGAACCAGACA TTCGACTTCGTAGTGGAAGATGCATTGCATGAGATGTTGATATTGGAGGTTTGGGATCATGACACTTTCGGAAAGGATAAAATTGGTAGAGTGATAATGA CACTAACAAGAGTGATAATGGAAGGTGAGTTTCAGGATTCGTTTCCTCTGGACGGTGCCAAATCTGGGAAGCTTTTCTTGCATCTCAAGTGGACTCCCCA GCTTAAATTCCGTGACCCTTAA
AA sequence Show only first row Show all	>Lus10006193 pacid=23148551 polypeptide=Lus10006193 locus=Lus10006193.g ID=Lus10006193.BGIv1.0 annot-version=v1.0 MSFFVGFFIGVSIGILLILGLARNESLRSARRSDLAKTVAAFARMTVQDSRKILPAEFYPSWVVFSNRQKLSFLHLPLNWLNHLLDKIWPYVDAAASELI RSNVEPILEQYRPAILSSLKFSKLTLGTVAPQFTGITIIEEESDSKGVTMELEMQWDGNPNIVLDINTRVGVALPIQVKDIGFTGVFRLIFKPLVPEFPG FAAISYSLREKKKLDFRLKVIGGELSSIPGLSDAIEETIKDAVEDSITWPVRKIIPILPGDYEDLELKPEGTLDVKLVQAKELSNKDVIGKSDPFAVLFV RPLRDRTKTSKVINNQLNPIWNEHFEFIVEDASTQHLTIRVFDDEGISASELIGQAQVSLKDLEHGKVKDVWLKLVKDLEVQRDNKYRGEVHLELLYVPY GMDSSLKNPFNPDFQLTTLEKTIKGGNEACEEPNLTSAASRKNVIIRGVLSVNVVAAEDLPAVDLMGKADPYVVLIMKKSDAKSKTRVVQESLNPVWNQT FDFVVEDALHEMLILEVWDHDTFGKDKIGRVIMTLTRVIMEGEFQDSFPLDGAKSGKLFLHLKWTPQLKFRDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10006193 [exp]	0	1
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	7.7	0.8120
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	10.6	0.7855
AT2G18196			Heavy metal transport/detoxifi...		Lus10033250 [exp]	11.0	0.8087
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	16.3	0.8008
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	16.7	0.7977
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10019155 [exp]	18.3	0.7626
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	20.9	0.7872
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	21.0	0.7268
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	23.0	0.7707
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	24.0	0.7363

Compare expression of checked genes

Lus10006193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.