Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32140 516 / 0 EamA-like transporter family (.1) AT3G07080 51 / 1e-06 EamA-like transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041032 [exp] 634 / 0 AT4G32140 607 / 0.0 EamA-like transporter family (.1) Lus10042422 [exp] 309 / 5e-99 AT4G32140 390 / 3e-130 EamA-like transporter family (.1) Lus10026249 [exp] 246 / 4e-78 AT4G32140 320 / 3e-107 EamA-like transporter family (.1) Lus10011864 [exp] 73 / 6e-14 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10022798 [exp] 41 / 0.001 AT3G07080 342 / 5e-116 EamA-like transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024700 [exp] 537 / 0 AT4G32140 581 / 0.0 EamA-like transporter family (.1) Potri.006G257000 [exp] 524 / 0 AT4G32140 566 / 0.0 EamA-like transporter family (.1) Potri.006G266400 [exp] 356 / 5e-121 AT4G32140 397 / 6e-137 EamA-like transporter family (.1) Potri.014G189500 [exp] 81 / 2e-16 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10006194 pacid=23148539 polypeptide=Lus10006194 locus=Lus10006194.g ID=Lus10006194.BGIv1.0 annot-version=v1.0 ATGGGTTGGAGGTATAAGGCTGGTTTGTTCTTGATAGCAGCTGTTGTTATTATATGGGTCACCTCTGCTGAAGTTACCCAGGGTATATTTACGGATTATA AGCAACCATTCGCTGTGACATATCTTGGGGCGTCTCTTATGGTAGTTTACCTTCCAATAGCATTCCTTAAAGACTGGCTGCACAAGTATTTGAACTTCCA CTCTTCAAAAAGTGGTAAAGGTTCGGGAAACACAAACGAGCCTTCTGATGGATTTGCCTCTCCTCGAAACCTGAAGATCGTTGAAATGGAACTTCAGGGA ACTTTGACCAAGAAAGACAGCGACTTATCCCTTTCAGTTGAAGACGAGGACGAGCCCCTGGTCCCTAGAAGCAAAGATGATCTCAATGTACTGAAAGTTA ACAAAGAACTAACCAACAGACAAGTTGCTGCTTATGGCTTCTACATTGCACCAATTTGGTTTGTCACTGAGTACCTATCAAATGCTGCTCTAGCTCGTAC AAGTGTTGCAAGTACAACAGTTTTATCATCAACTTCAGGACTTTTTACCCTCTTCCTAGGTGCCTTCCTAGGAGAAGACACTTTGAGCTTACCAAAAGTT GTAGCTGTCTTGGTGAGTCTTGCTGGTGTTGTCATGACTACTTTTGGGAAAACCTGGGCTGCTGATGAGTCCCAACTAAGTTCCTCCAACGACGGGGAAC GCACTCTTGTTGGCGACTTATTTGGTCTCTTATCAGCAGTATCATATGCACTATTTACAGTGCTTCTCAAGAAGTTTGCCGGTGAAGAAGGGGAGAGAGT TGATGTGCAGAAATTGTTTGGATACATCGGTTTGTTTACCCTTGTAGCCCTATGGTGGCTTGTGTGGCCGTTGACTGCCCTGGGAATAGAGCCCAAGTTC ACGATCCCACATTCTGCAAAAATGGATGAAGTTGTTCTCGCTAATGGCTTCATTGGGAGTGTCCTCTCTGATTATTTTTGGGCATTATCCGTCGTATGGA CGACACCGTTGGTGGCAACTTTGGGTATGTCACTGACAATCCCGCTTGCTATGGTGGCTGACATTGTTATACATGGTCGTCACTATTCGGCAATTTACAT TCTTGGCTCTGTTCAGGTGTTTGGTGGATTTGTGATAGCTAATCTTTCAGATCGCCTGTCGAAAACTCTCGGGTTGTAG
AA sequence Show only first row Show all	>Lus10006194 pacid=23148539 polypeptide=Lus10006194 locus=Lus10006194.g ID=Lus10006194.BGIv1.0 annot-version=v1.0 MGWRYKAGLFLIAAVVIIWVTSAEVTQGIFTDYKQPFAVTYLGASLMVVYLPIAFLKDWLHKYLNFHSSKSGKGSGNTNEPSDGFASPRNLKIVEMELQG TLTKKDSDLSLSVEDEDEPLVPRSKDDLNVLKVNKELTNRQVAAYGFYIAPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFLGAFLGEDTLSLPKV VAVLVSLAGVVMTTFGKTWAADESQLSSSNDGERTLVGDLFGLLSAVSYALFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPKF TIPHSAKMDEVVLANGFIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADIVIHGRHYSAIYILGSVQVFGGFVIANLSDRLSKTLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32140			EamA-like transporter family (...		Lus10006194 [exp]	0	1
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	3.9	0.9324
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10006978 [exp]	4.2	0.9366
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	5.3	0.9452
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10002329 [exp]	5.5	0.9166
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	7.3	0.9094
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	8.5	0.9125
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	8.5	0.9361
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10037332 [exp]	10.3	0.8811
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	10.6	0.9274
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	11.0	0.9218

Compare expression of checked genes

Lus10006194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.