Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 269 / 5e-90 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT2G45400 138 / 3e-39 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 130 / 3e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G61720 126 / 1e-34 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 117 / 2e-31 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G68540 100 / 5e-25 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G25460 99 / 8e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 92 / 4e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G80820 90 / 3e-21 CCR2, ATCCR2 cinnamoyl coa reductase (.1) AT1G15950 88 / 2e-20 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041031 [exp] 396 / 3e-140 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 150 / 8e-44 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 142 / 1e-40 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 134 / 1e-37 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 123 / 1e-33 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 112 / 1e-29 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10021294 [exp] 112 / 2e-29 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10041651 [exp] 109 / 3e-28 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10035016 [exp] 107 / 2e-27 AT1G68540 468 / 2e-167 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033600 [exp] 291 / 4e-99 AT5G42800 523 / 0.0 dihydroflavonol 4-reductase (.1) Potri.005G229500 [exp] 291 / 1e-98 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 175 / 9e-54 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 175 / 1e-53 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 173 / 7e-53 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 172 / 1e-52 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 172 / 1e-52 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 171 / 3e-52 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 168 / 5e-51 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 158 / 3e-47 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006195 pacid=23148563 polypeptide=Lus10006195 locus=Lus10006195.g ID=Lus10006195.BGIv1.0 annot-version=v1.0 ATGAGAGGAAGCGCCAAGGCCAAAACAGTAAGGAGAATAGTGTTCACTTCGTCGGCGGGGACGGTGGACGTGGAAGAGCACCATAAAGCAGTCTACGACG AGAACGATTGGAGCGATCTTGATTTCGTCCAAAGAGTCAAAATGACCGGATGGAGAAAGAGGCCTGGAAATTTGCAAAAGGAGAACAACTTGGATTTCAT AAGCATCATTCCAAGTGTGGTGGTTGGGCCTTTCATTATGCCATCCATGCCTCCCAGCCTCATCACTGCTCTCTCCCTCATCACCGGGAATGAAGCACAC TATTCGATCATAGAGCTAGGGCATTTCGTGCACTTGGACGACCTCTGCAACGCCCACATCTTCTTGCTGGAGCATCCAAATGCTCAGGGCCGTTACATGT GCAACTCTCACGACATCAACATTTACCAGCTTGCCCACTTTCTATCCAACAAATACCCCGACTACAACATCCCGACGGAGGATCAAAGGGAGAAGCTGAA GAAAGTGATTTTCTCGTCCGAAAAGCTGAAGAAGTTAGGATTCGAGTTCAAGTACGGACTGGAGGAGATGTTTGAAGGAGTTGTGGAGACTTGCAAGGAA AAGAGTTTGCTTCCACCATCAACAGTTGTGAAGGCTAATGGCCGTGTTGAAAACTAG
AA sequence Show only first row Show all	>Lus10006195 pacid=23148563 polypeptide=Lus10006195 locus=Lus10006195.g ID=Lus10006195.BGIv1.0 annot-version=v1.0 MRGSAKAKTVRRIVFTSSAGTVDVEEHHKAVYDENDWSDLDFVQRVKMTGWRKRPGNLQKENNLDFISIIPSVVVGPFIMPSMPPSLITALSLITGNEAH YSIIELGHFVHLDDLCNAHIFLLEHPNAQGRYMCNSHDINIYQLAHFLSNKYPDYNIPTEDQREKLKKVIFSSEKLKKLGFEFKYGLEEMFEGVVETCKE KSLLPPSTVVKANGRVEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	3.0	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	3.2	1.0000
AT2G40070			unknown protein		Lus10008717 [exp]	4.2	1.0000
					Lus10010414 [exp]	4.5	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	5.0	1.0000
					Lus10010663 [exp]	5.5	1.0000
					Lus10035743 [exp]	6.0	1.0000
					Lus10014229 [exp]	6.3	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	6.7	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	7.1	1.0000

Compare expression of checked genes

Lus10006195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.