Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25290 652 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 632 / 0 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 350 / 3e-109 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 347 / 9e-109 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 67 / 8e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 59 / 8e-09 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G54010 57 / 3e-08 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G53300 54 / 4e-07 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT1G33400 52 / 1e-06 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25230 51 / 3e-06 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001947 [exp] 835 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 823 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 811 / 0 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10008035 [exp] 691 / 0 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10038106 [exp] 690 / 0 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10039592 [exp] 358 / 1e-112 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 347 / 2e-108 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 66 / 1e-11 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 67 / 2e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258300 [exp] 980 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 742 / 0 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 592 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 375 / 6e-119 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 367 / 4e-116 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G178900 [exp] 72 / 2e-13 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 69 / 1e-12 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.011G111500 [exp] 59 / 9e-09 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.007G091200 [exp] 54 / 2e-07 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.016G105100 [exp] 53 / 6e-07 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10006196 pacid=23148553 polypeptide=Lus10006196 locus=Lus10006196.g ID=Lus10006196.BGIv1.0 annot-version=v1.0 ATGGGAAAGCCGGCAGGGAAGAAGAACCCTCCTCAATCTCCCAGAACTCCAAGAACTCCCAGAAGCGATGGCAACAACAATGTTAAGCTATTTTCTCAGA AGTCTTCCAAAGCTTTCGACGAGGATACCGCAATCTTTATCAACATGGCACAGGAGCTCAAGGAAGAAGGCAGCAGGCTCTACCAGAAGCGTGACCATGA AGGCGCCATTTCAAAGTACGAAAAGGCTGTCAAGCTACTTCCGAAGAACCATATCGACGTTGCTTATCTGCGCACCAACATGGCGTCTTGCTATATGCAC ATGGGTCTAGGTGAGTATCCCCGAGCTATTAACGAGTGTAATCTTGCTTTGGATGTTTCTCCCAAATACAGTAAAGCCTTGCTCAAGAGAGCTACGTGTT ATGAGGCCTTGAATCGCTTGGATTTTGCTTGGAGAGATGTTAATGTTGTTTTGACCATGGAGCCTAGTAACTCTGCTGCTCTGGAGATTCTTGCCAGTAT TAAACAGGCCATTGCTGATAAGGGTATGAGTATTGATGAAATTTCCATTGCTGTGGATGATGCGGAGAAGAAAAGTGTTGGTGTTGGTGCCTCTCGTTTA CGCAGAGTGGTTAATGAGAAGGTAAAGAAGAGGAAGAAGAAGACTGATACACCTGAGGAGGAGAAGAAGGCTGAAATTGTGGTTGCAGAGGAGAAGAAAG TTACTGTGGTTAAGAATAAGACTATTGAGGCAGAGACATCGTCAGCGATTGCCAAGACAGTGAAGTTGGTGTTAGGGGAAGATATAAGATGGGCACAATT GCCTGCCAATTGTAGTATTGGGTTGCTAAGGGATATAGTTCGAGATAGGTTTCCGGGGATGAGAGGGGTCCTTGTGAAATATAGAGACCAGGAGGGGGAT TTGGTTACAATTACTACCACTGATGAGCTGAGGTTAGCAGAATCTTCAGATGGTGGTTCTCAAGGATCACTTAAGTTCTACATCGTTGAGGTTAGCCTGG ATCTAGAGCCAACTTACGAGCGTTCGGAAAAAACAGGTGATGATGATGATGAAAAAAAGGTTGTGACTCAGGAACCAAACAATACTGATGATGAGGGAAG CAACGATCTTCAAAAGGAGTCAGCTTGCATTGACGATTGGATTATCCAGTTTGCACGGTTGTTCAAAAACCACGTTGGATTCGATTCTGATTCTTATCTG GATATCCATGAGCTAGGGATGAAGCTATACTCGGAAGCAATGGATGAAACTGTTGCAAGTGATGAAGCCCAGGAGCTCTTTGATATTGCTGCCGACAGAT TCCAGGAGATGGCAGCATTGGCTCTGTTTAATTGGGGAAACGTTCACATGTCAAGAGCTAGAAAGAGGGTTTTTTTCCCCGAAGATGGTTCAAGGGAGAC GTTATTGGCACTTGTTAAGAGTGCATATGACTGGTCAAAGACCGAGTATGTAAAAGCTGGAGAGAGATATCACAGAGCTCTAAGATTAAAACCGGACTTC TATGAAAGTCTTCTGGCACTTGGTCAGCAGCAGTTTGAGCAAGCAAAGCTTTGTTGGTATCATGCAGTTGGAAGCAATATTGATTTGGAGAGTGGGCCTT CTGAAGAGGTGCTAGATCTTTACAATAAGGCTGAGGACTGCATGGAACGAGGAATGCAAATGTGGGAGGAGATTGAGGAGCAGCGCCAAAATGGCATCTC GAAATACGACAAATATAAATCCCAGCTGATAAAATTGGGGCTGGATGGTCTACTGAAAGAGGTATCAACTGAAGAAGCTGTAGAGCAGGCAGCAAACATG AGTTCCCAGATAAACCTATTGTGGGGAACTATGCTTTATGAGCGTTCTGTTGTGGAGTATAGGCTAGAGCTACCAACTTGGGAAGAATGTTTGGAGGTAG CCGTTGAAAAATTTGAATTAGCGGGAGCTTCTCCAACAGATATAGCTGTTATGATAAAGAACCACTGTTCTAATGTAACAGCCTTTGATGGTTTGAGCTT CAAAATTGATGAGATAGTACAAGCATGGAATGAAATGTACGATGCTAAGAGATGGGAGATTGGTGTCCCATCTTTCAGGTTGGAGCCGTTGTTTCGCCGG CGGGCTCCCAAGCTTCATTATATGTTGGAGTCATTTTGA
AA sequence Show only first row Show all	>Lus10006196 pacid=23148553 polypeptide=Lus10006196 locus=Lus10006196.g ID=Lus10006196.BGIv1.0 annot-version=v1.0 MGKPAGKKNPPQSPRTPRTPRSDGNNNVKLFSQKSSKAFDEDTAIFINMAQELKEEGSRLYQKRDHEGAISKYEKAVKLLPKNHIDVAYLRTNMASCYMH MGLGEYPRAINECNLALDVSPKYSKALLKRATCYEALNRLDFAWRDVNVVLTMEPSNSAALEILASIKQAIADKGMSIDEISIAVDDAEKKSVGVGASRL RRVVNEKVKKRKKKTDTPEEEKKAEIVVAEEKKVTVVKNKTIEAETSSAIAKTVKLVLGEDIRWAQLPANCSIGLLRDIVRDRFPGMRGVLVKYRDQEGD LVTITTTDELRLAESSDGGSQGSLKFYIVEVSLDLEPTYERSEKTGDDDDEKKVVTQEPNNTDDEGSNDLQKESACIDDWIIQFARLFKNHVGFDSDSYL DIHELGMKLYSEAMDETVASDEAQELFDIAADRFQEMAALALFNWGNVHMSRARKRVFFPEDGSRETLLALVKSAYDWSKTEYVKAGERYHRALRLKPDF YESLLALGQQQFEQAKLCWYHAVGSNIDLESGPSEEVLDLYNKAEDCMERGMQMWEEIEEQRQNGISKYDKYKSQLIKLGLDGLLKEVSTEEAVEQAANM SSQINLLWGTMLYERSVVEYRLELPTWEECLEVAVEKFELAGASPTDIAVMIKNHCSNVTAFDGLSFKIDEIVQAWNEMYDAKRWEIGVPSFRLEPLFRR RAPKLHYMLESF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	0	1
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	4.8	0.8229
AT1G04910			O-fucosyltransferase family pr...		Lus10017105 [exp]	5.3	0.8181
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	5.5	0.7981
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	7.1	0.7713
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	8.8	0.8144
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	19.4	0.8102
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	19.4	0.7623
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	21.9	0.7676
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	23.0	0.7889
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	25.4	0.7468

Compare expression of checked genes

Lus10006196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.