Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11030 122 / 3e-31 ALF4 aberrant lateral root formation 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041030 [exp] 389 / 1e-129 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259600 [exp] 179 / 6e-52 AT5G11030 491 / 1e-167 aberrant lateral root formation 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006197 pacid=23148538 polypeptide=Lus10006197 locus=Lus10006197.g ID=Lus10006197.BGIv1.0 annot-version=v1.0 ATGCACTCCGTTCTATGTGAGACATTGGCGTTGTTAAGCACCGGTGATGATCCAGGTTCTGCTGCTCCTATCCTGACCGGACTTTCCAAAGTATTCATTT CCATTGAACGGCGTCATTTTGAGCAAGCAAAAGTGGCAGTTCCTATTGTCTTAAAAGTGCTAAAAGCTTCGTCACTGGAGCTAGCTGATAGTGATGCAGA AAGCATGCGTTTATTTAAGAGAGCTTTGTTAATGGTGGATTCTATTATTGCAGTTTGTACGAAACTGGACCATGGACTATGTGAGAAACTTCAGTCTCTT ATGGGTTTATTCATACTCCAAACTATGGCTCTTGTGTCAGCCATCGTACCCTCTGCTCTATCGGACCATATTCTTCTGGTGTCAGACATGTCAAAAGTTC TTCCACAATGTGGCTTGACATATCTTGGTTTGGTAACTGGATCTGATATTGATGTCAAGACTAATCTTACTACTGAAGCTGCTCTAGTCTGCATAGAGGA AGAAGATGATGTGATGACTTCATTTTCGGACATCAAGCAAGGTGCAGCTCTTTCAGTTATTTGGGGCCACATCTATGACAAGATTGCCCAAGAAGCAGGG GAGAATATGTCTGCTGTTAAGAAAACCAACCAGACGGGAGTATTGACGAGGAGAAATATGGTCAAGGCATACAATGAATGGCTTCTTCCTCTTCGGACAC TTGTGAATGGGATAATGGCAGAGCCTGAGAATGCTCGTGACGAGCTTGCAAACTCGCTTCTTAATCCAGTTGAACTAGTTTTGTACCGCTGTATTGAGCT TGTAGAAGGGAATTTATCAGCAAACCAGAACTCAACTTAG
AA sequence Show only first row Show all	>Lus10006197 pacid=23148538 polypeptide=Lus10006197 locus=Lus10006197.g ID=Lus10006197.BGIv1.0 annot-version=v1.0 MHSVLCETLALLSTGDDPGSAAPILTGLSKVFISIERRHFEQAKVAVPIVLKVLKASSLELADSDAESMRLFKRALLMVDSIIAVCTKLDHGLCEKLQSL MGLFILQTMALVSAIVPSALSDHILLVSDMSKVLPQCGLTYLGLVTGSDIDVKTNLTTEAALVCIEEEDDVMTSFSDIKQGAALSVIWGHIYDKIAQEAG ENMSAVKKTNQTGVLTRRNMVKAYNEWLLPLRTLVNGIMAEPENARDELANSLLNPVELVLYRCIELVEGNLSANQNST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	0	1
					Lus10008149 [exp]	5.5	0.8314
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	8.9	0.8345
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033641 [exp]	14.1	0.7871
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	15.0	0.8429
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042628 [exp]	15.8	0.8650
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	18.0	0.8497
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	19.1	0.8614
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	20.7	0.8607
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	21.3	0.8465
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	24.5	0.8262

Compare expression of checked genes

Lus10006197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.