Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19800 452 / 2e-161 MIOX2 myo-inositol oxygenase 2 (.1) AT1G14520 438 / 8e-156 MIOX1 myo-inositol oxygenase 1 (.1.2) AT5G56640 437 / 2e-155 MIOX5 myo-inositol oxygenase 5 (.1) AT4G26260 435 / 2e-154 MIOX4 myo-inositol oxygenase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041030 [exp] 595 / 0 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1) Lus10012923 [exp] 436 / 1e-154 AT4G26260 489 / 2e-175 myo-inositol oxygenase 4 (.1.2) Lus10035005 [exp] 431 / 1e-152 AT4G26260 477 / 7e-171 myo-inositol oxygenase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100200 [exp] 468 / 6e-168 AT2G19800 482 / 4e-173 myo-inositol oxygenase 2 (.1) Potri.008G144500 [exp] 437 / 1e-155 AT1G14520 514 / 0.0 myo-inositol oxygenase 1 (.1.2) Potri.018G069700 [exp] 435 / 1e-154 AT4G26260 465 / 2e-166 myo-inositol oxygenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF05153 [flax] [poplar] MIOX Myo-inositol oxygenase
Representative CDS sequence Show only first row Show all	>Lus10006198 pacid=23148566 polypeptide=Lus10006198 locus=Lus10006198.g ID=Lus10006198.BGIv1.0 annot-version=v1.0 ATGACAATCCAGTCCGCCGCTGTTGATCAGCAGCCTCAGCTCGTAGGTACAGGTGGTGGTTTCGAGTTGGATCGAAAGAAGATTAAGCTGATCGACATTG AAGCGGATCATAAGTTCACGGTGCCTGATAACAACGCATTTGGGGGATCCTTCAGGGATTACGAGAATGCCAACAGCGAAAGGCATAAGCTGGTCGAGGA ACTGTACCGACAGCAGCACATTCACCAGACGTATGAGTTCGTGACAAGGATGAGGGAAGAGTACGGGAAATTGGAGAAGGGGGAGATGAGCATATGGGAA TGCTGTGAGTTGCTCAACGATATAGTGGATGATAGTGATCCTGACTTGGATGAGCCTCAGATCATGCACTTGCTCCAGACTGCCGAAGCCATCCGTAAAG ACTATCCCGACGAGGACTGGCTTCACTTAACTGCTCTCATTCACGATCTGGGGAAAATCCTGATCCATCCAACATTTGGAGGATTGCCGCAATGGGCAGT AGTTGGCGATACTTACCCAGTGGGCTGCGCTTTCGACGAAACCGCCATTGTTCATCGCAGGCACTTGAAGGAGAACCCAGATTACGAGAATCCACAATAC AGCACTAAGACTGGTATGTACAGTGAAGGATGTGGGCTGAACAATGTGATGATGACATGGGGTCACGATGACTACATGTATTTGGTTGCCAAGCGAAACG GCACCACTTTGCCATCTCCTGCCTTGTTCATCATCCGATATCACTCCTTTTATCCACTGCACAAAGGGGATGCATACGGACACTTGATGAACGATGAAGA TAGGGACAACTTGAAATGGTTGAAAATATTCAACAAATATGACCTGTACAGCAAAAGCAAGGTTCCAATTGAGATTGGAAAGGTTAAGCCCTATTATATC TCCCTTATTGACAAGTATTTTCCTGCGAAGCTCAAGTGGTGA
AA sequence Show only first row Show all	>Lus10006198 pacid=23148566 polypeptide=Lus10006198 locus=Lus10006198.g ID=Lus10006198.BGIv1.0 annot-version=v1.0 MTIQSAAVDQQPQLVGTGGGFELDRKKIKLIDIEADHKFTVPDNNAFGGSFRDYENANSERHKLVEELYRQQHIHQTYEFVTRMREEYGKLEKGEMSIWE CCELLNDIVDDSDPDLDEPQIMHLLQTAEAIRKDYPDEDWLHLTALIHDLGKILIHPTFGGLPQWAVVGDTYPVGCAFDETAIVHRRHLKENPDYENPQY STKTGMYSEGCGLNNVMMTWGHDDYMYLVAKRNGTTLPSPALFIIRYHSFYPLHKGDAYGHLMNDEDRDNLKWLKIFNKYDLYSKSKVPIEIGKVKPYYI SLIDKYFPAKLKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10006198 [exp]	0	1
					Lus10026358 [exp]	3.6	0.7377
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	3.7	0.7579
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10035005 [exp]	4.7	0.7798
AT3G44380			Late embryogenesis abundant (L...		Lus10020628 [exp]	8.3	0.7157
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10040679 [exp]	8.5	0.7192
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	13.4	0.7423
AT1G55140			Ribonuclease III family protei...		Lus10015626 [exp]	14.7	0.7560
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	15.8	0.7652
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10041030 [exp]	24.5	0.7676
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	24.7	0.7666

Compare expression of checked genes

Lus10006198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.