Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70560 405 / 8e-141 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G23320 399 / 3e-138 TAR1 tryptophan aminotransferase related 1 (.1) AT4G24670 397 / 5e-137 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G34060 265 / 5e-85 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 264 / 2e-84 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036846 [exp] 724 / 0 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10039944 [exp] 377 / 5e-129 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 372 / 4e-128 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 306 / 2e-97 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10028695 [exp] 251 / 3e-79 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 226 / 1e-69 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042084 [exp] 169 / 2e-50 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044500 [exp] 455 / 4e-160 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 451 / 7e-159 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.T125108 [exp] 407 / 1e-140 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.012G083300 [exp] 407 / 1e-140 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.002G063800 [exp] 273 / 6e-88 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G064000 [exp] 252 / 5e-80 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Lus10006199 pacid=23139710 polypeptide=Lus10006199 locus=Lus10006199.g ID=Lus10006199.BGIv1.0 annot-version=v1.0 ATGATCAACGAAAGCGGGGATCCCGCGGTGTTCGAGCCGTACTGGAGGAAGAACGGGGACAAGTGCACGATCACGATCGCCGGCCACGACTCGCTGAGCT ACTTCTCCGACGCGACGAGCGTGTGCTGGTACATGGAGCCGAAGCTCCGGGACGCCATCCGGAGGGTCCACCGTGTCGTTGGAAATGCGGTCACTGATGA TCATCACTTGGTTGTCGGGACGGGGTCAACACTCCTGTTTCAGGCGGCGCTTTACGCGCTCGCCGGGCCTGTTGTTGAAGCCGGAACTGCTAAGCCCGTG GACGTCGTTTGTGCCGCTCCTTACTATTCGCAATACAAGGAGCAAGTTGAGATGGTCAAATCACGACTGTATGAGTGGGGAGGAGACGCCCGTACGTATA ACAAGACCAAGGAACCATACATCGAGGTCGTTACCACCCCGAACAATCCTGACGGTAGTCTGCAAGAGGCGGTGGTGAATCGCGAGGATGGGATGTTGAT TCATGACTTGGCTTACTATTGGCCTAGCTACACTCCCGTTACTCGTCCTGCTGACCATGATATCATGCTCTTTACCCTCACCAAGTGCACCGGTCACGCT GGATCAAGGATCGGATGGGCGATTGTGAAGGACAAAGAGGTTGCAAGGAGGATGACGTTGTTCATGCAGATATGCACAATAGGGGTATCGAAAGATTCTC AACTGCGCGCTGCGAAGATTCTAGATGTGATCTCGCAAGATTGTGAAAATCTTGATTCGGATGAAACGTTCTTCGGGCAAAGCCGAAAGGTGATGGAAGA GAGATGGGAAAAACTAAAGGAAGCCATTAGGGTTCAAGATACATTCAGCTTGCCTAAGTACCCACAACAATATTGCAACTTCAGCGAGAAATTTTTCCAT CCAGCTCCATCTTTCGGATGGCTAAAGTGCAAAGACGGACGCGACGCATCCTCTTTGTTGAAAGAACATAATGTCCTTACTAGAGGTGGAAAGGCATTTG GGGTGAGTAGCAAGTACACGAGGATCAGCATGATTGGTAGAGACGAAGATTTTGATCGATTTGTCAAGAGGGTTTCGAGGATTCAATATTCCGATTATCA TGATGGAGCTTCGGCATAA
AA sequence Show only first row Show all	>Lus10006199 pacid=23139710 polypeptide=Lus10006199 locus=Lus10006199.g ID=Lus10006199.BGIv1.0 annot-version=v1.0 MINESGDPAVFEPYWRKNGDKCTITIAGHDSLSYFSDATSVCWYMEPKLRDAIRRVHRVVGNAVTDDHHLVVGTGSTLLFQAALYALAGPVVEAGTAKPV DVVCAAPYYSQYKEQVEMVKSRLYEWGGDARTYNKTKEPYIEVVTTPNNPDGSLQEAVVNREDGMLIHDLAYYWPSYTPVTRPADHDIMLFTLTKCTGHA GSRIGWAIVKDKEVARRMTLFMQICTIGVSKDSQLRAAKILDVISQDCENLDSDETFFGQSRKVMEERWEKLKEAIRVQDTFSLPKYPQQYCNFSEKFFH PAPSFGWLKCKDGRDASSLLKEHNVLTRGGKAFGVSSKYTRISMIGRDEDFDRFVKRVSRIQYSDYHDGASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	0	1
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	1.0	0.9757
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	1.7	0.9494
AT2G28690			Protein of unknown function (D...		Lus10005884 [exp]	3.0	0.9315
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	4.7	0.9520
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	4.9	0.9425
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	5.3	0.9377
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	7.7	0.9407
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10021266 [exp]	10.8	0.9090
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	11.2	0.9235
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	13.9	0.9249

Compare expression of checked genes

Lus10006199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.