Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77630 43 / 6e-05 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT1G21880 42 / 0.0002 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G51940 40 / 0.0007 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036847 [exp] 318 / 1e-111 AT1G51940 42 / 1e-04 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 167 / 3e-48 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 162 / 1e-46 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 73 / 9e-15 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 52 / 9e-08 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 52 / 1e-07 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 47 / 3e-06 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10014441 [exp] 44 / 5e-05 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10026372 [exp] 42 / 0.0002 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081601 [exp] 144 / 3e-40 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 144 / 3e-40 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 117 / 2e-30 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 52 / 1e-07 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 50 / 4e-07 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 46 / 5e-06 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 45 / 2e-05 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 45 / 2e-05 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 41 / 0.0003 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 41 / 0.0004 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10006200 pacid=23139734 polypeptide=Lus10006200 locus=Lus10006200.g ID=Lus10006200.BGIv1.0 annot-version=v1.0 ATGGCTTCACTTCAATTCCTTCTCATCCTCACCTTCATAATTCCCCTCTTCAACGCACAACCACCAACCATGTTCCCATTCCCATGCACCAAAAAGATCA TCAACACATGCACATCAACCCTCTACCACATCACCACCACAAACTCCACCACCACCCTCCAAGAACTCGGCCACAATTACTCGGTCCAACCATCCCAAAT CAAACCTGTTACCCACATCGAGAAGCAGGACTTCCTCATTACAGTCTCTTGCTCCTGCCAGACTGCTGCCGACCAGACGACCGCCTACTTCTACAACGTT GACTACACGGTCAATATTGGGGACACACTCTTCGACGTGTCAACGAATGCCTACAGCGGGCAAGTGTGGGCCACGGGCGGCGAGCAGGATAGGTTCGTTG CCGGGAACAATGTGACCATGAACTTGTTGTGCGGGTGTCTCGGGAGCACGGCGGAGAACGTTGTGACGTATACTGTTCAGGATGGGGACACTTTGTTCGG GATTGCTAGAATGTTTGGTAGTGATTTGGGCGAGATTCATAAGCTTAATAACAAGTTTTTAGGGAATTCCAGTGAGTTTATTGATGTGGGTTGGGTTCTT TATGTGCCGGTAGGAACTAATGGAACTTTGTTCTAG
AA sequence Show only first row Show all	>Lus10006200 pacid=23139734 polypeptide=Lus10006200 locus=Lus10006200.g ID=Lus10006200.BGIv1.0 annot-version=v1.0 MASLQFLLILTFIIPLFNAQPPTMFPFPCTKKIINTCTSTLYHITTTNSTTTLQELGHNYSVQPSQIKPVTHIEKQDFLITVSCSCQTAADQTTAYFYNV DYTVNIGDTLFDVSTNAYSGQVWATGGEQDRFVAGNNVTMNLLCGCLGSTAENVVTYTVQDGDTLFGIARMFGSDLGEIHKLNNKFLGNSSEFIDVGWVL YVPVGTNGTLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	1.4	1.0000
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	2.0	1.0000
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	2.8	1.0000
					Lus10012394 [exp]	4.7	0.9772
					Lus10033149 [exp]	4.9	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	5.9	1.0000
					Lus10026868 [exp]	6.0	0.9548
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	6.0	1.0000
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	6.5	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	6.9	1.0000

Compare expression of checked genes

Lus10006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.