Plant FIBer expression Database

Lus10006201 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70570 884 / 0 anthranilate phosphoribosyltransferase, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036848
[exp]
1128 / 0 AT1G70570 869 / 0.0 anthranilate phosphoribosyltransferase, putative (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G044900
[exp]
950 / 0 AT1G70570 903 / 0.0 anthranilate phosphoribosyltransferase, putative (.1.2)
PFAM info
Representative CDS sequence
>Lus10006201 pacid=23139713 polypeptide=Lus10006201 locus=Lus10006201.g ID=Lus10006201.BGIv1.0 annot-version=v1.0
ATGGAAGCTCTGCTCAGTCCGCAACCTCCTTCACTCTCATTTCAGCTAGGGGAGCCTCGCCGCCTGAATAGCCTCGGCTCGATCCGATTAATCAGAGCTG
GACGCAGTTGGATCGGACGATCGCGCTTTCGAACAGTGAAAGCCGTTTTGGACTCGGCTACGCTGGATCAATTAGGAATATCTGAATCGGAGATTAGGAA
TCCGACGGTTTCTTCCTCATATCGGAGCTCCAAGTTGCAGAAGCCGAACCAGACTGTTCTCGATGCTCAAGCTAGGGTTTGCACAGGTCCTGAAATGACC
AAGCCGCTTACAGAGGAGCAAGCTTTCAAAGTCTTCGACACTATATTAAGATCAGCGAGGGGTGAGCTGAAAGATGAAGAAAGAGTTTCCAGAGCTCAGT
TAGGAGCTTTCTTTGCTGGAATGACGATTCGTGCGAATGTGTTTCCTGAAGCAACTCAATGGAGTGAAGGGGAGAGGCGTGCAGTTACTAGATTTTGGCC
TGAGCTGGTTCGAGTTTTGCCGCCTGATGTGGTGTTTATTGCAGATCCCGAGGGTTCGATCATGAGGGTTGGGAATTCGATAGGACCTCGGTTTGTTGGC
AATGATACTACTGAGATGCGATTGGTTGGTGCACTTAGGGAGGTGTTAGCTGGTGGCCATCTCGGGTACGAGGAGGTCCAAGGTGTATTGAGGGATGTTC
TGCCATTAAATAACAATGAGTGCTCGAAAGAGTCGCTAGTTTCGGCTTTCTTGATTGGTCAGCGGATGAACAGAGAGACCGATCGCGAGTTGAAAGCATA
CTGCCTTGCATTTGATAATGAACTTGGTCCTCCTCCAGTTGCCGATGTTAGATCTTTAACCCATTATGGTGAACCTTATGATGGAAACACACGCTTCTTT
CGGAGCACATTGTTCGTCGCTGCTGTTAGATCGTGTTATGAAGAATCTTCGTTGCTTCATGGTGTGGACTGGATGCCACCTAAGGGAGGCATAACGGAAG
AGCAAATGCTGAAGTTCATGGGTGCAAATACAAACCTGACCCCGTTACAGGCAAAAGACCTTCTTGAGGATGAGGATCTTGGTTTTGCCTACATAAGTCA
GCGTGAGGCACACCCATCCCTATATTCGTTGATTAAGTTGAGGGAGCACATGAAGAAGCGTCCACCTCTGGCGACGACAGAGAAGGTTCAACAGTTAGTA
AGGGCGAAGGGAAGGGAAGCTATTGTTGCTGGATTCTATCATGGCGGATACGAGGAGCCACTTTTGATGCTTATGAGAAGAAGAGGTGTCCATTCTGGTT
TGGTTGTGAAGGGGGAGGAAGGAGCCCTGTCTATGACCACAAGATTGCGGTCAGGAAATGCGTCGAAAGGACTTCCTGTGAACTACTGCTCAGGATTCCG
TTCGTCAAGTACAGCTTCTGCACTCGAAGTTGATGGCGTTTCTCGACAGAGCTTCAGCGTCGAGGTCAATGCGAAGGATTACGGTTTCGAGCCCACTGAT
ACTCCTAGAACAGATAGATCGGTTTCCAAGAACATAGAGCTGGGTCTGGCGGCTCTTCATGGTGAGAAGGGACCAGCATACGATCGTATTGTATTGAACG
CTGGAATGATCGACCACTTGCTGGGATGCGACGACTCGAACGACATATATTCAGCCCTGGATCGAGCTAGAGAGGCCATCGATAGTGGTCGAGCACTAAA
AAGGCTTTTAAGCTATATGAAGGCCACCAACAAAATGAAGTGA
AA sequence
>Lus10006201 pacid=23139713 polypeptide=Lus10006201 locus=Lus10006201.g ID=Lus10006201.BGIv1.0 annot-version=v1.0
MEALLSPQPPSLSFQLGEPRRLNSLGSIRLIRAGRSWIGRSRFRTVKAVLDSATLDQLGISESEIRNPTVSSSYRSSKLQKPNQTVLDAQARVCTGPEMT
KPLTEEQAFKVFDTILRSARGELKDEERVSRAQLGAFFAGMTIRANVFPEATQWSEGERRAVTRFWPELVRVLPPDVVFIADPEGSIMRVGNSIGPRFVG
NDTTEMRLVGALREVLAGGHLGYEEVQGVLRDVLPLNNNECSKESLVSAFLIGQRMNRETDRELKAYCLAFDNELGPPPVADVRSLTHYGEPYDGNTRFF
RSTLFVAAVRSCYEESSLLHGVDWMPPKGGITEEQMLKFMGANTNLTPLQAKDLLEDEDLGFAYISQREAHPSLYSLIKLREHMKKRPPLATTEKVQQLV
RAKGREAIVAGFYHGGYEEPLLMLMRRRGVHSGLVVKGEEGALSMTTRLRSGNASKGLPVNYCSGFRSSSTASALEVDGVSRQSFSVEVNAKDYGFEPTD
TPRTDRSVSKNIELGLAALHGEKGPAYDRIVLNAGMIDHLLGCDDSNDIYSALDRAREAIDSGRALKRLLSYMKATNKMK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G70570 anthranilate phosphoribosyltra... Lus10006201
[exp]
0 1
Lus10039350
[exp]
2.4 0.9287
AT4G37320 CYP81D5 "cytochrome P450, family 81, s... Lus10041643
[exp]
2.6 0.9319
AT5G52830 WRKY ATWRKY27, WRKY2... ARABIDOPSIS THALIANA WRKY DNA-... Lus10027538
[exp]
3.7 0.9171
AT1G71910 unknown protein Lus10016934
[exp]
4.2 0.9162
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10010700
[exp]
9.3 0.8944
AT3G51660 Tautomerase/MIF superfamily pr... Lus10000344
[exp]
10.1 0.9265
AT4G04450 WRKY ATWRKY42, WRKY4... WRKY family transcription fact... Lus10009969
[exp]
11.2 0.8998
AT5G23160 unknown protein Lus10010194
[exp]
15.2 0.9226
AT5G03700 D-mannose binding lectin prote... Lus10014371
[exp]
15.6 0.9227
AT5G51500 Plant invertase/pectin methyle... Lus10031140
[exp]
16.9 0.8984

Lus10006201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.