Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10700 535 / 0 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 452 / 1e-159 Phosphoribosyltransferase family protein (.1) AT2G35390 86 / 3e-18 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 83 / 3e-17 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 75 / 1e-14 Phosphoribosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036849 [exp] 756 / 0 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10007345 [exp] 465 / 2e-164 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10020768 [exp] 464 / 3e-164 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 454 / 2e-160 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 454 / 2e-160 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10040098 [exp] 82 / 1e-16 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10012074 [exp] 78 / 2e-15 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10030948 [exp] 71 / 3e-13 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 55 / 6e-08 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045000 [exp] 555 / 0 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.005G202100 [exp] 467 / 2e-165 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.002G059700 [exp] 458 / 4e-162 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.014G179600 [exp] 81 / 2e-16 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.003G088400 [exp] 81 / 2e-16 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.001G145700 [exp] 81 / 2e-16 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10006202 pacid=23139703 polypeptide=Lus10006202 locus=Lus10006202.g ID=Lus10006202.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCGATGGAGTCGCCGTCTCTCCGTTCCACGATTCAGAACCCGACCCGTTCTCGCCTACCAACTCCCGCAAAATGCTCGAATTTCAACTCGC TTCAGCGTGTGAAGAAGAATTGCAGGAGGCCTATCCGTGTTTGCTGCCAAATCAAGAGCTTTGAAACCCACCCGAATTCCCCCGTGGTCGGGTTTTTATC CGGCTCCGATCGCATTGGCTCCTCTTCTTCTCCTGTTCCAATGGCTTCTGTTTCCGATTCCGGGTCCAAAGGTGGTAAAAGAGTCATCCTTTTCTACTCT AACGAGACCAAGGCTTTAGCTGAGCGAGTCTCCTGGCAGTCTGATGCCATCGAGCTCCGTTCCATCCACTGGAACACATTCGACGATGGATTCCCGAACT TGTTCATACCGAACGCTCAAGGGATTCGCGGGCAGCACGTTGCTTTTCTGGCTTCGTTCAGCTCACCGAAGGTGATCTTCGAGCAGCTTTCGATCATCTA TGCACTACCCAAGTTGTTCATCTCATCATTCACTCTGGTGCTTCCATTCTTCCCGACCGGAACGTCGGAGCGAATGGAGGATGAAGGAGACGTCGCCACA GCTTTTACACTCGCCAGGATCTTGTCGAATATACCGACCCCACGAGGAGGGCCTACCAGCTTGGTCACCTTTGATATCCATGCCTTGCAGGAGAGGTTCT ACTTCGGGGATAACATCCTGCCGTGTTTCGAAAGTGGGATACCTTTGCTTATGAAACGGCTCCAACAGCTTCCTGATTCTGATAATATAGCAATAGCTTT CCCTGATGACGGTGCGTGGAAACGATTTCATAAGCAGCTGCAGCATTTCCCCACGATCGTGTGTGCTAAGGTTCGGGAAGGCGAGCAGAGGATTGTTCGG ATCAAGGAAGGGGATCCTCGAGGACGCCACGTGGTAATTGTCGATGATTTGGTTCAGTCGGGCGGAACCTTGATCGAATGCCAGAAAGTGCTGGCTAAGC ATGGAGCAGCAAGAGTAAGTGCTTATGTGACCCATGGGATTTTCCCGAACCAGTCATTCGAGCGCTTTCAGCTCGACAATGGAGGTAACCCAGCTACCGG TCTTACCTACTTCTGGATCACAGATTCATGCCCATCGACTGTGAAGGCAGTGATGACTAGACGACCATTCGAGGTTCTTAGCCTGGCCAGTTCAATAGCA GCTGCTCTTCAGATCTAA
AA sequence Show only first row Show all	>Lus10006202 pacid=23139703 polypeptide=Lus10006202 locus=Lus10006202.g ID=Lus10006202.BGIv1.0 annot-version=v1.0 MAAAMESPSLRSTIQNPTRSRLPTPAKCSNFNSLQRVKKNCRRPIRVCCQIKSFETHPNSPVVGFLSGSDRIGSSSSPVPMASVSDSGSKGGKRVILFYS NETKALAERVSWQSDAIELRSIHWNTFDDGFPNLFIPNAQGIRGQHVAFLASFSSPKVIFEQLSIIYALPKLFISSFTLVLPFFPTGTSERMEDEGDVAT AFTLARILSNIPTPRGGPTSLVTFDIHALQERFYFGDNILPCFESGIPLLMKRLQQLPDSDNIAIAFPDDGAWKRFHKQLQHFPTIVCAKVREGEQRIVR IKEGDPRGRHVVIVDDLVQSGGTLIECQKVLAKHGAARVSAYVTHGIFPNQSFERFQLDNGGNPATGLTYFWITDSCPSTVKAVMTRRPFEVLSLASSIA AALQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Lus10006202 [exp]	0	1
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	3.3	0.7455
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	21.0	0.7080
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	21.8	0.7168
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	42.0	0.6602
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10018724 [exp]	59.6	0.6744
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	61.2	0.6760
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027914 [exp]	86.9	0.6256
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	133.6	0.6113
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	157.6	0.5751
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027916 [exp]	174.7	0.5983

Compare expression of checked genes

Lus10006202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.