Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70580 868 / 0 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT1G23310 865 / 0 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G72330 478 / 2e-165 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G17290 468 / 2e-161 ALAAT1 alanine aminotransferas (.1) AT2G20610 104 / 4e-24 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G51690 97 / 2e-21 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G28420 94 / 1e-20 Tyrosine transaminase family protein (.1.2) AT2G24850 89 / 7e-19 TAT3 tyrosine aminotransferase 3 (.1) AT5G36160 87 / 3e-18 Tyrosine transaminase family protein (.1) AT4G26200 87 / 3e-18 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036850 [exp] 980 / 0 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10026692 [exp] 909 / 0 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10004623 [exp] 896 / 0 AT1G70580 865 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10037455 [exp] 469 / 1e-161 AT1G72330 893 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10003935 [exp] 466 / 2e-160 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10008579 [exp] 99 / 3e-22 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10032695 [exp] 96 / 4e-21 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10015023 [exp] 96 / 7e-21 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10032654 [exp] 94 / 1e-20 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187400 [exp] 899 / 0 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.010G045100 [exp] 897 / 0 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.003G072600 [exp] 469 / 3e-162 AT1G72330 838 / 0.0 alanine aminotransferase 2 (.1.2.3) Potri.001G162800 [exp] 464 / 4e-161 AT1G17290 828 / 0.0 alanine aminotransferas (.1) Potri.001G099400 [exp] 93 / 4e-20 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.018G067000 [exp] 92 / 5e-20 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.017G014100 [exp] 90 / 4e-19 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.015G132100 [exp] 90 / 6e-19 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.006G149600 [exp] 89 / 9e-19 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G163700 [exp] 89 / 1e-18 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10006203 pacid=23139696 polypeptide=Lus10006203 locus=Lus10006203.g ID=Lus10006203.BGIv1.0 annot-version=v1.0 ATGGCACCCAGAAAAGCTTTGGATTACCAATTGTTGAACGAGAACGTTAAGAAAGTTCAGTATGCTGTGAGAGGCGAGCTCTACCTTCGAGCTTCTGAGC TTCAGAAGGAAGGAAAGAAGATTATCTTCACCAACGTTGGAAACCCTCATGCTCTTGGACAGAAGCCACTTACTTTTCCTCGCCAGGTGGTTGCTCTTTG CCAAGCTCCATTTCTACTAGATGATCCCAATGTCGGACTCCTTTTCCCTGCTGACGCTATTGCCAAGGCTAAACATTACCTTTCACTGAATTCCGGCGGA TTAGGTGCATACAGCGATTCGCGAGGCATTCCAGGTGTTAGGAAGGAGGTGGCAGACTTCCTTCTAAGGCGTGATGGATATCCGAGTGACCCAGAATTGA TCTTCCTAACTGACGGTGCAAGCAAAGGTGTGATGCAGATCTTGAACACAATTATTAGCGGTCCGAGTGATGGGATCCTTGTTCCAGTGCCACAATACCC TCTTTACTCTGCTGCAATCAGTCTCTATGGTGGAACCCTTGTGCCATACTACTTAGAAGAGAAGGAAAACTGGGGTCTTGATGTTAATGACTTACGGAAC GCAGTTTCTCAAGCTCGTTCCAAAGGGATAACCGTGAAAGCAATGGTGATTATCAACCCGGGAAACCCCACCGGTCAGTGTCTTAGTGAGGCAAACTTGA GGGAGATACTGCGGTTCTGTTATGAAGAAAACTTGGTTCTTTTCGGAGACGAGGTGTACCAGCAGAATGTTTACCAGGACGAGCGGCCCTTCGTTAGCTC GAAAAAGGTGTTGATGGATATGGGTCCTCCTCATAGCAAGGAAGTTCAGCTTGTTTCCTTCCATACTGTGTCGAAAGGATATTGGGGCGAATGTGGGCAG CGAGGCGGATACTTTGAGCTGACCAATATTCCTCCACAGACAGTTGATGAGATCTATAAGGTTGCTTCCATCTCACTCAGCCCGAATGTGCCTGCACAGA TATTTATGGGGCTAATGGTCAACCCGCTCAAACCTGGGGACATGTCATATGAGCTGTTTGCAAGAGAAAGCAAAGGCATCCTGGAATCACTAAGGAGAAG AGCTAGGATTATGACAGATGGGTTCAACAGCTGCAGAAATGTAGTATGCAACTTCACTGAAGGTGCCATGTATTCGTTCCCTCAAATACGATTGCCTCCA AAGGCGATCGAGGCTGCGAAAAGCGCAGGAAAAGTTCCCGATGTGTTCTACTGCCTGAAGCTACTGGAAGCTACAGGGATCTCCACTGTGCCTGGCTCAG GGTTTGGACAAAAAGAAGGGGTGTTCCATCTAAGGACAACGATCTTACCCGCGGAGGAAGACATGCCGGCAATCATGGAAAGCTTCAAGAAGTTCAACGA CGAGTTCATGGATCAGTATGAAGGCCACCACTTCTCAAGGCTGTAA
AA sequence Show only first row Show all	>Lus10006203 pacid=23139696 polypeptide=Lus10006203 locus=Lus10006203.g ID=Lus10006203.BGIv1.0 annot-version=v1.0 MAPRKALDYQLLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIAKAKHYLSLNSGG LGAYSDSRGIPGVRKEVADFLLRRDGYPSDPELIFLTDGASKGVMQILNTIISGPSDGILVPVPQYPLYSAAISLYGGTLVPYYLEEKENWGLDVNDLRN AVSQARSKGITVKAMVIINPGNPTGQCLSEANLREILRFCYEENLVLFGDEVYQQNVYQDERPFVSSKKVLMDMGPPHSKEVQLVSFHTVSKGYWGECGQ RGGYFELTNIPPQTVDEIYKVASISLSPNVPAQIFMGLMVNPLKPGDMSYELFARESKGILESLRRRARIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP KAIEAAKSAGKVPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMDQYEGHHFSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10006203 [exp]	0	1
					Lus10020564 [exp]	1.0	0.9802
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	1.7	0.9719
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	2.0	0.9635
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	2.4	0.9751
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	3.3	0.9514
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	3.7	0.9479
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	4.5	0.9526
					Lus10007097 [exp]	5.2	0.9371
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	5.9	0.9570
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	6.0	0.9564

Compare expression of checked genes

Lus10006203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.