Plant FIBer expression Database

Lus10006204 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40460 51 / 2e-09 unknown protein
AT1G10690 45 / 6e-07 unknown protein
AT1G60783 40 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002514
[exp]
53 / 5e-10 AT5G40460 105 / 7e-31 unknown protein
Lus10022268
[exp]
52 / 6e-10 AT5G40460 96 / 3e-27 unknown protein
Lus10026693
[exp]
44 / 1e-06 AT1G60783 47 / 5e-08 unknown protein
Lus10004622
[exp]
37 / 0.0004 AT1G60783 51 / 9e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G045200
[exp]
70 / 8e-17 AT1G10690 92 / 2e-25 unknown protein
Potri.017G070000
[exp]
57 / 9e-12 AT5G40460 89 / 3e-24 unknown protein
Potri.008G187300
[exp]
53 / 4e-10 AT5G40460 97 / 3e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10006204 pacid=23139690 polypeptide=Lus10006204 locus=Lus10006204.g ID=Lus10006204.BGIv1.0 annot-version=v1.0
ATGGGTTTCTCCTCAGAGGATGGCAAGTGGGTAATTTCCGGCATCCACCTAAGATCGCCGCTGAAGCCCATCTACACTAAGGTAGACGTCATCGACGGTG
GAGGAGATGATGACGTGTGCGTCGGCTGTCCTCAGCCGACGACTCCAAAGGACGAGGAGGCGAGGATTTCGGATAAGCTGCCGTGTCCGCCGCCGCCGAG
GAAGCGGAGGGCCACCTTCAAGCGGAAGTGCAACGCCGGCGGCGGAGGAGGAGGAGGAGTAAGGGAGTTCTTCACTCCTCCTGATTTGGAAACTGTGTTC
GTACGGCGTCATGTTCAAAGGGCAGGGTAA
AA sequence
>Lus10006204 pacid=23139690 polypeptide=Lus10006204 locus=Lus10006204.g ID=Lus10006204.BGIv1.0 annot-version=v1.0
MGFSSEDGKWVISGIHLRSPLKPIYTKVDVIDGGGDDDVCVGCPQPTTPKDEEARISDKLPCPPPPRKRRATFKRKCNAGGGGGGGVREFFTPPDLETVF
VRRHVQRAG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60783 unknown protein Lus10006204
[exp]
0 1
AT1G10740 alpha/beta-Hydrolases superfam... Lus10030904
[exp]
8.9 0.8567
AT2G28200 C2H2ZnF C2H2-type zinc finger family p... Lus10038674
[exp]
13.7 0.8406
AT5G47060 Protein of unknown function (D... Lus10043343
[exp]
14.0 0.8487
AT3G11980 FAR2, MS2 MALE STERILITY 2, FATTY ACID R... Lus10016208
[exp]
14.3 0.8475
AT1G09570 FHY2, HY8, FRE1... ELONGATED HYPOCOTYL 8, FAR RED... Lus10007594
[exp]
15.2 0.8559
AT1G67560 ATLOX6, LOX6 Arabidopsis thaliana lipoxygen... Lus10006429
[exp]
15.4 0.8768
AT1G03220 Eukaryotic aspartyl protease f... Lus10021938
[exp]
16.8 0.8451
AT5G45550 MOB1-like MOB1-like, Mob1/phocein family... Lus10017172
[exp]
16.9 0.8372
AT1G77660 Histone H3 K4-specific methylt... Lus10028062
[exp]
19.5 0.8271
AT5G65670 AUX_IAA IAA9 indole-3-acetic acid inducible... Lus10042929
[exp]
24.4 0.7894

Lus10006204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.