Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 664 / 0 MATE efflux family protein (.1) AT1G23300 654 / 0 MATE efflux family protein (.1) AT5G38030 653 / 0 MATE efflux family protein (.1) AT1G12950 641 / 0 RSH2 root hair specific 2 (.1) AT1G47530 509 / 5e-178 MATE efflux family protein (.1) AT4G00350 493 / 5e-171 MATE efflux family protein (.1) AT4G25640 445 / 6e-153 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G11670 428 / 4e-146 MATE efflux family protein (.1) AT3G21690 428 / 5e-146 MATE efflux family protein (.1) AT1G61890 419 / 1e-142 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036851 [exp] 780 / 0 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 761 / 0 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 692 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 690 / 0 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 504 / 2e-176 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 488 / 9e-170 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 488 / 2e-169 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 484 / 4e-168 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 480 / 1e-166 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 715 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 676 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 453 / 9e-156 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.012G144900 [exp] 451 / 4e-155 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002800 [exp] 444 / 1e-152 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 438 / 4e-150 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 434 / 3e-148 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 430 / 7e-147 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 425 / 3e-146 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 425 / 9e-145 AT1G11670 669 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10006205 pacid=23139695 polypeptide=Lus10006205 locus=Lus10006205.g ID=Lus10006205.BGIv1.0 annot-version=v1.0 ATGGAGGATTACAAGCAGCCGCTTCTACTTCCTCCTCCGACAACAGCGGAGGAAAAGCACTCCGAAAGAAACGGCGGCCGAGATGATGCAGACATTCCTC CGATCGGCACCCTCAGAGACTTCTGCCGGGAGTTTTATGCAGAATCGGTCAAGCTCTGGTTCCTGGCGGGACCCGCAATCTTCACTTCCGTGTGTCAGTA CTCCCTCGGCGCCGTAACTCAAATCTCCGCTGGCCAAGTTGGCACTCTCGAGCTCGCCGCCGTCTCCGTCGAAAACTCTGTCATCGCCGGCTTCTCCTTC GGCACCATGCTAGGCATGGGGAGCGCACTCGAGACACTGTGCGGCCAAGCCTACGGGGCAGGACAGCTAGACATGTTAGGAGTCTACATGCAACGCTCGT GGGTCATCCTACTCGCCACGTCAGCTCTCCTCAGCCTAATGTACATCTTCGCGGGCCCATTGCTCCTTCTCCTCGGCCAAACCCCGTCGATTTCACGCGC CGCGGGTGTCTTCTCCATGTGGATGATCCCTCAGCTATTCGCCTACGCGCTCAACTTCCCGATGGCCAAGTTCCTCCAGGCGCAGAGTAAGATGATGGTG ATGGCCGGGATCGCGGCTGCCGCGTTGGCCCTCCACGCGCTCTTCAGCTGGCTGCTCATACTCAAGCTAGGGTGGGGGCTCGCGGGCGCCGCGGTGGTGC TCAACGTTTCGTGGTGGTTCATCAACGTGTCGCAGTTTGCATATGTGGCCGGCGGGAGCTGCGGCAGGGCTTGGAGTGGGTTCACGTGGAAGGCCTTCCG GAATTTGTGGAGCTTTGTTCGGCTGTCGCTTGCCTCCGCTGTCATGGTATGCTTGGAAATTTGGTACTTCATGGTGTTGATACTCTTTGCTGGCTACCTT AAACACGCTCAAGTTTCTGTAGCTGCTTTGTCCATATGCATGAACATTTTGGGATGGACTATCATGGCAGCTTTCGGAATGAATGCAGCCATCAGTGTGA GAATCTCCAACGAATTAGGAGCAGGCCATCCGAGGACAGCGAAATTCGCGCTCATGGTCGCGGTTATATCGTCGTTCATGGTGGGCTTTGCCCTCGCACT CGTGCTCGTCGTCTCTAGGGACTACTACCCGTCGCTGTTCTCGAACGATCCAGCTGTGAAACTCGTTGTCGCGGAGATGACCCCGCTGCTGGCTCTGTGC ATCGTCATTAACAATGTTCAACCCGTTCTCTCCGGTGTGGCTATTGGGGCTGGATGGCAAGCTGCTGTGGCTTATGTAAACATCGTTTGCTATTATGTGT TTGGGATTCCTTTGGGCCTCATTTTGGGCTACGAACTTGATATGGGTAACAAGGGGATTTGGTATGGGATGATGGGGGGAACAGTGGTGCAAACACTTGT GCTTTATTGGATGATCTACAAAACCAATTGGAATAAGGAGGCTTCGATGGCCGAAGATCGGTTGAAGAAATGGGGAGGAGACGAAAATTCGAAAGAGTCG TATAATTAA
AA sequence Show only first row Show all	>Lus10006205 pacid=23139695 polypeptide=Lus10006205 locus=Lus10006205.g ID=Lus10006205.BGIv1.0 annot-version=v1.0 MEDYKQPLLLPPPTTAEEKHSERNGGRDDADIPPIGTLRDFCREFYAESVKLWFLAGPAIFTSVCQYSLGAVTQISAGQVGTLELAAVSVENSVIAGFSF GTMLGMGSALETLCGQAYGAGQLDMLGVYMQRSWVILLATSALLSLMYIFAGPLLLLLGQTPSISRAAGVFSMWMIPQLFAYALNFPMAKFLQAQSKMMV MAGIAAAALALHALFSWLLILKLGWGLAGAAVVLNVSWWFINVSQFAYVAGGSCGRAWSGFTWKAFRNLWSFVRLSLASAVMVCLEIWYFMVLILFAGYL KHAQVSVAALSICMNILGWTIMAAFGMNAAISVRISNELGAGHPRTAKFALMVAVISSFMVGFALALVLVVSRDYYPSLFSNDPAVKLVVAEMTPLLALC IVINNVQPVLSGVAIGAGWQAAVAYVNIVCYYVFGIPLGLILGYELDMGNKGIWYGMMGGTVVQTLVLYWMIYKTNWNKEASMAEDRLKKWGGDENSKES YN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26590			MATE efflux family protein (.1...		Lus10006205 [exp]	0	1
					Lus10035457 [exp]	1.4	0.8885
					Lus10034870 [exp]	13.8	0.8855
					Lus10035617 [exp]	16.9	0.8855
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	19.5	0.8855
					Lus10011759 [exp]	21.8	0.8855
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	23.9	0.8855
					Lus10024550 [exp]	25.8	0.8855
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	27.6	0.8855
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10027433 [exp]	29.2	0.8855
AT3G11680			Aluminium activated malate tra...		Lus10013347 [exp]	30.8	0.8855

Compare expression of checked genes

Lus10006205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.