Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26590 664 / 0 MATE efflux family protein (.1) AT5G38030 657 / 0 MATE efflux family protein (.1) AT1G12950 650 / 0 RSH2 root hair specific 2 (.1) AT1G23300 636 / 0 MATE efflux family protein (.1) AT1G47530 557 / 0 MATE efflux family protein (.1) AT4G00350 492 / 3e-170 MATE efflux family protein (.1) AT4G25640 458 / 6e-158 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT3G21690 442 / 2e-151 MATE efflux family protein (.1) AT1G11670 441 / 6e-151 MATE efflux family protein (.1) AT1G61890 430 / 1e-146 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036854 [exp] 964 / 0 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 697 / 0 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 662 / 0 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10036852 [exp] 596 / 0 AT1G23300 598 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 537 / 0 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 518 / 0 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 502 / 1e-174 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 499 / 1e-173 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10039263 [exp] 490 / 2e-170 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063500 [exp] 738 / 0 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 724 / 0 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 473 / 4e-163 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 472 / 4e-163 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.011G002800 [exp] 467 / 5e-161 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 454 / 4e-156 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 452 / 3e-155 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 451 / 4e-155 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 451 / 4e-155 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.011G002900 [exp] 449 / 3e-154 AT3G21690 654 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10006206 pacid=23139692 polypeptide=Lus10006206 locus=Lus10006206.g ID=Lus10006206.BGIv1.0 annot-version=v1.0 ATGGAGGAACCAAAGCTGCAGCAGCATCAGCCACTTCTTCCACCCAACCATCAAGAACCAGATGATCATGACTCACAAGTAGAAGTACTACTAACTCCGT CTCTCCATTCACTAGCAGCAGCTGATGCTGATGCAGAGGATATCCAACCAATCGTTAGCCTTCAGGATTTCTCCACAGAGTTCTGGGCCGAGTCGAAGAA GCTATGGTGGCTTGCTGGGCCCGCAGTGTTCACAACTCTGTGCCAGTACTCACTTGGAGCCATCACTCAAGTGCTTGCTGGCCAGGTTGGCACCTTGGAG CTTGCTGCTGTCTCTGTGGAGAACAATGTTATTGCTGGCTTCTCCTTTGGTGTCATGCTCGGGATGGGGAGCGCGCTCGAAACACTATGCGGTCAGGCCT ACGGAGCGAAACAGCTAGACATGCTAGGAATCTACATGCAAAGGTCATGGGTGATCCTAACATCAACGGCTATAATCCTCAGTTTTCTCTACATCTTTGC GGGTCCGTTTCTCGAGCTAATCGGGCAGAAACCCGAAATAGCTAGAGCCGCGGGAACATTCTCAATATGGATGATCCCGCAGCTTTTTGCATATGCAGCC AACTTCCCGATCGCCAAGTTCCTACAGGCTCAGAGCAAAATCATGGCCATGGCCTTGATCTCGACCTTGGCCCTCGTCCTCCACACCTTCTTCAGCTGGC TTCTGATGCTGAAGTTAGGGTGGGGGATGGTTGGGGCCGCGGTGGTCCTCAACAGTTCGTGGTGGTTCATCGTGTTGGGTCAGCTTTTGTACATTTTTAG CGGGACTTGCGGCCATGCTTGGTCCGGGTTCTCGTGGAGGGCGTTCCAGAATTTGTGGGGGTTCGTCCGGCTGTCCCTTGCATCTGCTGTTATGCTCTGT TTGGAAATATGGTATTTTATGGCTTTGATAATTTTTGCTGGATATCTGAAGAATGCAGAGGTCTCTGTTGATGCATTGTCTATAAGCATGAACATAATGG GGTGGACAGTCATGGTGGCACTTGGAATCAATGCAGCAATCAGCGTACGAGTGTCGAACGAGCTTGGAGCAGCACACCCGAGAACAGCCAAGTTCTCGGT CGCGGTTGCAGTGATATCCTCCTTCCTGATCGGCCTCGTGATCGCATCCATCCTCATAGCGGCGCAAAAAGGCTACCCATCTTGGTTCTCCAATGATTTC GACGTAAGGGCGCTTGTGGAAGCGCTTACGCCGTTGCTTGCTCTCTCCATCGTTATCAACAATGTCCAACCCGTCCTCTCTGGTGTGGCGATTGGAGCAG GATGGCAAGCTGCGGTAGCTTACGTGAACATTGCTTGCTACTATGCGTTCGGGATACCTATCGGTCTGGTTTTCGGCTACATGCTTCACCTCGGAGTCAG GGGAATCTGGTATGGGATGCTGGCCGGCACGATCCTGCAGACTCTAGTTCTGTTCGGGATGGTTTACAGAACCAACTGGAACAAAGAGGCTTCGGCGGCA GAAGAGAGGATAAGGAAATGGGGAGGAGATGATGGATCCAAAGAGACCGATGCTTAA
AA sequence Show only first row Show all	>Lus10006206 pacid=23139692 polypeptide=Lus10006206 locus=Lus10006206.g ID=Lus10006206.BGIv1.0 annot-version=v1.0 MEEPKLQQHQPLLPPNHQEPDDHDSQVEVLLTPSLHSLAAADADAEDIQPIVSLQDFSTEFWAESKKLWWLAGPAVFTTLCQYSLGAITQVLAGQVGTLE LAAVSVENNVIAGFSFGVMLGMGSALETLCGQAYGAKQLDMLGIYMQRSWVILTSTAIILSFLYIFAGPFLELIGQKPEIARAAGTFSIWMIPQLFAYAA NFPIAKFLQAQSKIMAMALISTLALVLHTFFSWLLMLKLGWGMVGAAVVLNSSWWFIVLGQLLYIFSGTCGHAWSGFSWRAFQNLWGFVRLSLASAVMLC LEIWYFMALIIFAGYLKNAEVSVDALSISMNIMGWTVMVALGINAAISVRVSNELGAAHPRTAKFSVAVAVISSFLIGLVIASILIAAQKGYPSWFSNDF DVRALVEALTPLLALSIVINNVQPVLSGVAIGAGWQAAVAYVNIACYYAFGIPIGLVFGYMLHLGVRGIWYGMLAGTILQTLVLFGMVYRTNWNKEASAA EERIRKWGGDDGSKETDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	8.1	0.8147
AT5G19640			Major facilitator superfamily ...		Lus10013736 [exp]	12.1	0.6995
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	16.4	0.7947
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006636 [exp]	20.1	0.7712
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	20.5	0.8110
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10010109 [exp]	27.5	0.7781
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	28.6	0.7789
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10021422 [exp]	34.4	0.7891
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	35.6	0.7835
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	50.6	0.7790

Compare expression of checked genes

Lus10006206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.