Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26580 258 / 9e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036856 [exp] 488 / 4e-175 AT3G26580 368 / 9e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090000 [exp] 239 / 4e-76 AT3G26580 323 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006208 pacid=23139726 polypeptide=Lus10006208 locus=Lus10006208.g ID=Lus10006208.BGIv1.0 annot-version=v1.0 ATGGCGGTGGTGGGAAACTTGGCGCTTCTACTCGACGGAACGATGCCTCCGGCGATATTTCTCCCGGAGCGGAAAACTCGACCGGTGGCTCTGGATTTCC TGCTGAGCTTGTCAAAGCGGGAGCTTCATCATCTCACGACTTCGCACAACGTCTACACTTCTCCTCTCGCGGCAAAGAGCTTCAAATCAGAAGGAGAGAG GAAGAATTTGAGAGGAGGTCGGAGGAAACTGAATTCGAAGGTGAACGGCGTTGATTTCGACAGCGACGATGAGTACGGAAACCAAAACGGCGAGGGAGAA GAAGAGGAGGAGGAGGAAATTCCGTACGATTGGGAGGATTCCATAAAGAAGCAAATGGAGGAGATTCAAGAGATGAAGGATTTGGAGAAGAAGGCGGAGG AGTTGCAGGACAAGGCGGGAGATGAGAGCAGCGAAGAAGGGAAAGAAGAAGAGACTGAAGAGGAGAAGAGGCAGAGAGTTAGGAAAGAGCTTGAAAAGGT TGCCCGGGAGCAGGCGGAGAGGAGACAAACGGCTCAATTGATGTTCGACTTAGGACAAAGAGCTTACGGCAGAGGCATGTATGGAAGATCCGTTGAGTTT CTTGAAGCTGCTCTGACTATAATCCCAAGGCCTACCTTATTTGGTGGTGAGATTCAGATATGGTTGGCAATGGCTTATGATGCGAATAACAGGCGCGCAG ATTGCCTTACTCTCTACAGGCAATTGGAGGAGACGCATCCTAGCATCGGCATTCGTCGCCAAGCTGCTGAACTTCGATACATCTCGCAAGCACCGAAGCT CAAGATAACCCAAGAAGAAATGGTTACAATCCCGCTCATTGGTTCTGCTTATGACAGGTAA
AA sequence Show only first row Show all	>Lus10006208 pacid=23139726 polypeptide=Lus10006208 locus=Lus10006208.g ID=Lus10006208.BGIv1.0 annot-version=v1.0 MAVVGNLALLLDGTMPPAIFLPERKTRPVALDFLLSLSKRELHHLTTSHNVYTSPLAAKSFKSEGERKNLRGGRRKLNSKVNGVDFDSDDEYGNQNGEGE EEEEEEIPYDWEDSIKKQMEEIQEMKDLEKKAEELQDKAGDESSEEGKEEETEEEKRQRVRKELEKVAREQAERRQTAQLMFDLGQRAYGRGMYGRSVEF LEAALTIIPRPTLFGGEIQIWLAMAYDANNRRADCLTLYRQLEETHPSIGIRRQAAELRYISQAPKLKITQEEMVTIPLIGSAYDR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10006208 [exp]	0	1
AT3G26580			Tetratricopeptide repeat (TPR)...		Lus10036856 [exp]	1.0	0.8920
AT3G56010			unknown protein		Lus10040939 [exp]	7.1	0.8294
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10028298 [exp]	9.2	0.7757
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	10.0	0.7907
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	11.0	0.8015
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10006111 [exp]	18.7	0.7577
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	20.3	0.8103
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016025 [exp]	22.3	0.7465
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10041842 [exp]	22.9	0.7518
AT2G24060			Translation initiation factor ...		Lus10036595 [exp]	25.6	0.7800

Compare expression of checked genes

Lus10006208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.