Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70610 910 / 0 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT5G39040 283 / 6e-86 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G28010 268 / 6e-77 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G27940 267 / 2e-76 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT5G46540 264 / 1e-75 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G62150 263 / 3e-75 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G36910 258 / 3e-73 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT2G47000 257 / 6e-73 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28390 256 / 6e-73 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G18050 255 / 2e-72 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036857 [exp] 1290 / 0 AT1G70610 953 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10022270 [exp] 625 / 0 AT1G70610 738 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Lus10007987 [exp] 314 / 1e-97 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10021145 [exp] 308 / 1e-95 AT5G39040 868 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10010012 [exp] 257 / 4e-73 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10023929 [exp] 258 / 5e-73 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10004519 [exp] 243 / 7e-73 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004583 [exp] 256 / 1e-72 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10004530 [exp] 246 / 2e-72 AT1G02520 682 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G045900 [exp] 922 / 0 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.015G059800 [exp] 316 / 2e-98 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 311 / 7e-97 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 310 / 4e-96 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 287 / 2e-87 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.002G187400 [exp] 258 / 3e-73 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 256 / 2e-72 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.006G123900 [exp] 253 / 1e-71 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G354900 [exp] 253 / 1e-71 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.016G093600 [exp] 252 / 3e-71 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10006209 pacid=23139687 polypeptide=Lus10006209 locus=Lus10006209.g ID=Lus10006209.BGIv1.0 annot-version=v1.0 ATGGCGCTTCTTCAGCTTTCCATTACAGCGCCACGTCTCCTCCCTTCGCGCCACCGTCTCCGGGTCAGCGGCGCGGTTGACCGACGGAGTGTCCGTCTAT CTAGAGTTGCGAAGTACGGTTTCTCTAACCTGTCATTCAAGGCTTGCAACAAGTTTGCTGCAACTCGCTTTGCGCCGCTGGTGAGATGTGCTTCCGTGAA CGGATACACGATAGAGAACGGAGGAGCGGGGAAGGTAATCGATGGAGGAGGAGAGGAAGCGGACGGAAATGACGAGCTGCACCAGCGGATTCGGGGATTC ATTGAGTTCCTGCCATCGATTTTGCCCGGAGGAAATTGGTGGAGCTTATCCGATGACGTGGATGTCAAGCTCGTGGCGGAGCCGGTAACTGTTTGGCGAG CTTTGGGGAGGATGTGGCAGCTTGTGGCTCGGGATCGTTGGATCATATTCGCCGCATTCTCCGCCCTAATTTTAGCTGCGGTATCAGAGATCTCCATACC CCATTACTTGACGGCGTCGATTTTCACGGCACAGAGCGCTGACGTTTCCACATTTCATCGGAACGTCCGGTTGCTAATTTTGCTCTGCGTTACTTCTGGA ATATGCAGAGATGCTGAAATCGTTGTTTTTGTCTGTTTGAAGTTCAGTGGCTTAAGAGGTTGCTGCTTTGGCATTGCTAATATGATCCTTGATATTTCGT TTTTCGACGATGAAACAGTTGGTGATTTGACAAGTAGGCTTGGGTCTGACTGCCAACAAGTGTCCCGTGTTATTGGGAATGATCTTAACCTTATCTTGAG GAACGTTGTGCAGGGAACAGGTGCATTGACCTACTTGTTGATCCTTTCGAAGCCACTTGGTCTATGTACCCTATTCATATGCTCAGTTTTGGCAGCTGTG ATGACGATTTACGGCATGTATCAGAAGAAAGCTGCAAGGCTGACCCAAGAGTTCACGGCTTCTGCTAATGATGTGGCTCAGGAGACACTTTCTTTGATTA GGACAGTCCGTGTTTATGGAACTGAGAAATTAGAACGTCAAAGGTATAATTTATGGCTCGACAGATTGGCTGATATAAGTTTAAAGCAAAGTGCTGCATA TGGGATATGGAATTTGAGCTTCAATACACTTTATCACTCTACCCAGGTCATTGCTGTGTTATTAGGAGGAATGTCTATTCTTGCTGGTCAAATTACAGCA GAGCACCTCACAAAGTTCATACTATACAGCGAATGGCTGATCTTTTCTACTTGGTGGGTGGGAGACAATTTATCATCTCTCATGCAGTCTGTTGGATTGC AGTTACAGAAGATTAAGGGAAGCATTGACTTCCAAAACATATCTTTCCATTATCCTTCTAGAGAATCAGTGCAAGTACTCCAACATGTAAATATTACTGT TCATCCCGGTGAAGTTATTGCAATTGTCGGTCTTAGTGGTAGTGGGAAAAGCACTTTGGTGAATCTATTGCTCCGCCTATACAAGCCAACAAGCGGCCAG ATTCTAATCGATGGCACTCCACTTCAAGATCTGGATATCAAATGGTTCAGGGAAAGAATTGGGTATGTCGGGCAGGAGCCTAAGCTCTTCCGGACGACCC TGAGTTCGAACATAAGCTATGGATGCCCACGAGACGTAACTCAGGAGGAAATAGAGCATGCTGCTAAGGAAGCATTCGCTCACGACTTCATCACTTCCCT ACCTGATGGCTACAAAACGATCGTCGATGATGACCTGCTGAGCGGAGGCCAGAAGCAGAGAATCGCCATCGCTCGAGCTATTCTCAGGGACCCTTCGATC TTGATCCTCGACGAAGCCACGAGTGCACTCGACGCAGAGAGTGAGCACAACGTGAAGGGCGTTATCCGTTCCCTTAGAAGCGACTCAATGTCGAGGAGAA CAGTCATCGTGATTGCCCATCGGCTATCGACCATACAAGCTGCCGATAGGATTGTTGTGATGGGTAACGGTGAAGTGCTCGAGATGGGGAGACATAAGGA GTTGCTCCTTAAAGATGGCCTCTATGCTCAATTAACCAGGAGACAAGCTGACGCCGTTGCGTAA
AA sequence Show only first row Show all	>Lus10006209 pacid=23139687 polypeptide=Lus10006209 locus=Lus10006209.g ID=Lus10006209.BGIv1.0 annot-version=v1.0 MALLQLSITAPRLLPSRHRLRVSGAVDRRSVRLSRVAKYGFSNLSFKACNKFAATRFAPLVRCASVNGYTIENGGAGKVIDGGGEEADGNDELHQRIRGF IEFLPSILPGGNWWSLSDDVDVKLVAEPVTVWRALGRMWQLVARDRWIIFAAFSALILAAVSEISIPHYLTASIFTAQSADVSTFHRNVRLLILLCVTSG ICRDAEIVVFVCLKFSGLRGCCFGIANMILDISFFDDETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVVQGTGALTYLLILSKPLGLCTLFICSVLAAV MTIYGMYQKKAARLTQEFTASANDVAQETLSLIRTVRVYGTEKLERQRYNLWLDRLADISLKQSAAYGIWNLSFNTLYHSTQVIAVLLGGMSILAGQITA EHLTKFILYSEWLIFSTWWVGDNLSSLMQSVGLQLQKIKGSIDFQNISFHYPSRESVQVLQHVNITVHPGEVIAIVGLSGSGKSTLVNLLLRLYKPTSGQ ILIDGTPLQDLDIKWFRERIGYVGQEPKLFRTTLSSNISYGCPRDVTQEEIEHAAKEAFAHDFITSLPDGYKTIVDDDLLSGGQKQRIAIARAILRDPSI LILDEATSALDAESEHNVKGVIRSLRSDSMSRRTVIVIAHRLSTIQAADRIVVMGNGEVLEMGRHKELLLKDGLYAQLTRRQADAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10006209 [exp]	0	1
AT3G16560			Protein phosphatase 2C family ...		Lus10004793 [exp]	1.4	0.8027
					Lus10040651 [exp]	1.7	0.7744
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10000806 [exp]	2.0	0.7815
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	5.3	0.7703
AT3G62010			unknown protein		Lus10038011 [exp]	6.5	0.7105
AT1G18660			zinc finger (C3HC4-type RING f...		Lus10019075 [exp]	8.9	0.6763
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10028677 [exp]	8.9	0.6999
AT5G14970			unknown protein		Lus10014506 [exp]	10.6	0.7057
AT5G27260			unknown protein		Lus10006034 [exp]	16.5	0.6408
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	16.5	0.7105

Compare expression of checked genes

Lus10006209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.